View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16265_low_42 (Length: 246)

Name: NF16265_low_42
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16265_low_42
NF16265_low_42
[»] chr3 (1 HSPs)
chr3 (1-246)||(111052-111297)
[»] chr6 (1 HSPs)
chr6 (1-246)||(20646569-20646814)
[»] scaffold0072 (1 HSPs)
scaffold0072 (6-161)||(1415-1570)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 111297 - 111052
Alignment:
Q  1 cagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacacaaaataatccactat 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  111297 cagccgctccttataatctcccagattttacaaaaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacacaaaataatccactgt 111198  T
Q  101 cataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagtgttttagagttacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111197 cataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagtgttttagagttacat 111098  T
Q  201 ataaatcttaaataagtacaaagtatcattagattgactacaaata 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  111097 ataaatcttaaataagtacaaagtatcattagattgactacaaata 111052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20646569 - 20646814
Alignment:
Q  1 cagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacacaaaataatccactat 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20646569 cagccgctccttataatctcccagattttacaaaaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacacaaaataatccactgt 20646668  T
Q  101 cataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagtgttttagagttacat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20646669 cataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagcgttttagagttacat 20646768  T
Q  201 ataaatcttaaataagtacaaagtatcattagattgactacaaata 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20646769 ataaatcttaaataagtacaaagtatcattagattgactacaaata 20646814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 161
Target Start/End: Complemental strand, 1570 - 1415
Alignment:
Q  6 gctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacacaaaataatccactatcataa 105  Q
    |||||||||||||| ||||||||||||| ||||||  || || | ||||||  |||| ||||||||||  || ||||||||| | ||   ||| ||||||    
T  1570 gctccttataatcttccagattttacaaaaacactctcagcagcaaaggaaagataatcatcatcaccgtatgaagacacaacagaacttactgtcataa 1471  T
Q  106 ctattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaa 161  Q
    ||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  1470 ctattgaagaataaaagaaaattaagatttacatgaaaccaaatccattgatggaa 1415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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