View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16265_low_44 (Length: 238)

Name: NF16265_low_44
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16265_low_44
NF16265_low_44
[»] chr3 (2 HSPs)
chr3 (43-211)||(45382702-45382880)
chr3 (128-174)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (123-203)||(27661703-27661783)
chr6 (123-160)||(26650237-26650274)
chr6 (123-160)||(26756205-26756242)
chr6 (119-159)||(12627824-12627864)
chr6 (123-163)||(29449688-29449728)
chr6 (48-98)||(8148268-8148318)
chr6 (51-104)||(20809178-20809231)
chr6 (123-152)||(28783014-28783043)
chr6 (105-162)||(34057962-34058019)
chr6 (49-85)||(29670971-29671007)
chr6 (126-162)||(30537508-30537544)
chr6 (51-99)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (123-163)||(43160491-43160531)
chr7 (114-161)||(10893872-10893919)
chr7 (123-165)||(650524-650566)
chr7 (123-159)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (123-162)||(28136673-28136712)
chr5 (123-160)||(645342-645379)
chr5 (114-159)||(11601688-11601733)
chr5 (51-99)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (56-98)||(14229600-14229642)
chr8 (123-163)||(32691750-32691790)
chr8 (114-162)||(41686804-41686852)
chr8 (114-162)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (69-165)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (123-173)||(10164460-10164510)
chr4 (123-161)||(28890768-28890806)
chr4 (119-155)||(29388374-29388410)
chr4 (123-163)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (114-159)||(264615-264660)
chr1 (63-103)||(27835482-27835522)
chr1 (123-159)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 45382880 - 45382702
Alignment:
Q  43 ataatgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacat-----------atgtgatta 131  Q
    |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||           |||||||||    
T  45382880 ataatgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgatta 45382782  T
Q  132 cattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttcatgtctct 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  45382781 cattcaaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcatgtctct 45382702  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  128 attacattcaaatatgttattttcttaaattactactgatgttgacg 174  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 203  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattac 160  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattac 160  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  119 acatatgtgattacattcaaatatgttattttcttaaatta 159  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattactac 163  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  48 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 98  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  51 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 104  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  123 atgtgattacattcaaatatgttattttct 152  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  105 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 162  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  49 aactttgtagcacagacatttctgatcgaaggcatgt 85  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  126 tgattacattcaaatatgttattttcttaaattacta 162  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  51 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 99  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattactac 163  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  114 caccaacatatgtgattacattcaaatatgttattttcttaaattact 161  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattactactg 165  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaatta 159  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattacta 162  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattac 160  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  114 caccaacatatgtgattacattcaaatatgttattttcttaaatta 159  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  51 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 99  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  56 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 98  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattactac 163  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  114 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 162  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  114 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 162  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  69 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 165  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 173  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattact 161  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  119 acatatgtgattacattcaaatatgttattttcttaa 155  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaattactac 163  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  114 caccaacatatgtgattacattcaaatatgttattttcttaaatta 159  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  63 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 103  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  123 atgtgattacattcaaatatgttattttcttaaatta 159  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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