View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_low_47 (Length: 230)
Name: NF16265_low_47
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 26968585 - 26968713
Alignment:
| Q |
93 |
aaaccaaatagtattgtttccatttaaacttaacaaaacaaccaaaaggtaaacaaacaagtttcatgattcatcacatcatgaatata---------ac |
183 |
Q |
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| T |
26968585 |
aaaccaaatagtattgtttccatataaacttaacaaagcaaccaaaaggtaaacaaacaagtttcatgattcatcacatcatgaatataacttgatgtac |
26968684 |
T |
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| Q |
184 |
tacaaatcacttctttttaatatcaagga |
212 |
Q |
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| T |
26968685 |
tacaaatcacttctttttaatatcaagga |
26968713 |
T |
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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 45382700 - 45382612
Alignment:
| Q |
19 |
tcagtgcttcatagataatgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccaaatagtatt |
107 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
45382700 |
tcagtgcttcatagataacgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccagattgtatt |
45382612 |
T |
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