View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16265_low_5 (Length: 541)

Name: NF16265_low_5
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16265_low_5
NF16265_low_5
[»] chr3 (13 HSPs)
chr3 (135-526)||(45909973-45910347)
chr3 (399-511)||(20993581-20993693)
chr3 (20-126)||(20981628-20981734)
chr3 (83-127)||(45910829-45910873)
chr3 (376-451)||(45880802-45880877)
chr3 (73-125)||(45870264-45870316)
chr3 (376-451)||(45855761-45855836)
chr3 (20-126)||(20994787-20994893)
chr3 (399-512)||(20980437-20980550)
chr3 (160-269)||(45869858-45869967)
chr3 (373-412)||(2995315-2995354)
chr3 (239-283)||(45855929-45855973)
chr3 (58-86)||(45914095-45914123)
[»] chr5 (6 HSPs)
chr5 (314-470)||(7975730-7975886)
chr5 (377-435)||(38141044-38141102)
chr5 (383-435)||(7895931-7895983)
chr5 (88-124)||(7976533-7976569)
chr5 (88-121)||(7895317-7895350)
chr5 (20-48)||(7976609-7976637)
[»] chr4 (5 HSPs)
chr4 (137-435)||(3979299-3979597)
chr4 (383-470)||(36590331-36590418)
chr4 (484-525)||(20272818-20272859)
chr4 (383-453)||(20272898-20272970)
chr4 (88-127)||(3978424-3978463)
[»] chr7 (1 HSPs)
chr7 (385-526)||(44500129-44500270)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-175; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 135 - 526
Target Start/End: Complemental strand, 45910347 - 45909973
Alignment:
Q  135 atttttattgaaaattaattgactagcattagactaatccatttgcacccttcattgcctaggttctttccttatctcctagtctgttgaactataatct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45910347 atttttattgaaaattaattgactagcattagactaatccatttgcacccttcattgcctaggttctttccttatctcctagtctgttgaactataatct 45910248  T
Q  235 actttccttgggtaacttgaagtcattgaaagtggtaatggaaccacttctgtataaaattcgcatggcactgtgtgaagtcaagttacagaaacttaag 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  45910247 actttccttgggtaacttgaagtcattgaaagtggtaatggaaccacttctgtataaaattcgcatggcactgtgtgaattcaagttacagaaagttaag 45910148  T
Q  335 ttaaagacaaaagctgctaagttacgaaaagattttgtagaaggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaatt 434  Q
    | ||||                 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  45910147 tcaaag-----------------acgaaaagattttgtagaaggattggaaccatcttcactcatacctgatggaatattggacttcttgcttcgaaatt 45910065  T
Q  435 cgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttataattggtttgtttttcgtttccttctctg 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45910064 cgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttataattggtttgtttttcgtttccttctctg 45909973  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 20993693 - 20993581
Alignment:
Q  399 tacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttata 498  Q
    |||||||||| |||  ||||||||||| |||||||||||| || ||||||||||| |||||||||||| |||   || || ||| | ||||| |||||||    
T  20993693 tacctgatgggatagtggacttcttgcgtcaaaattcgccctcggcagaagttgacttcgtagattgcacaagaaaacctgttagaccaagacatttata 20993594  T
Q  499 attggtttgtttt 511  Q
    |||||||||||||    
T  20993593 attggtttgtttt 20993581  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 20981734 - 20981628
Alignment:
Q  20 tttcacacaatgtccagcggttaggacttgaggtcaatggtgacatcgggaacattccgcttagcgtattttcatgtcagactttaacacatcttaagct 119  Q
    |||||||||||||||||||||||  ||||   |||||| ||||||| | | | ||||| | |||| ||||||||| |||| |||||||||||||| ||||    
T  20981734 tttcacacaatgtccagcggttacaactttgtgtcaattgtgacattgcgcaaattcctcatagcctattttcatttcagcctttaacacatcttgagct 20981635  T
Q  120 ttctatt 126  Q
    |||||||    
T  20981634 ttctatt 20981628  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 45910873 - 45910829
Alignment:
Q  83 gcgtattttcatgtcagactttaacacatcttaagctttctattt 127  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  45910873 gcgtgttttcatgtcagactttaacacatcttaagctttctattt 45910829  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 45880877 - 45880802
Alignment:
Q  376 aggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagtt 451  Q
    |||||| ||||||||| ||| ||||||||||||||||    ||||||||||||||||||||||||| ||| |||||    
T  45880877 aggattggaaccatctgcacccatacctgatggaataattaacttcttgcttcaaaattcgccatcggcacaagtt 45880802  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 45870316 - 45870264
Alignment:
Q  73 attccgcttagcgtattttcatgtcagactttaacacatcttaagctttctat 125  Q
    ||||||| |||| | ||||||||||||||| ||||||||||||||||||||||    
T  45870316 attccgcctagcatgttttcatgtcagactctaacacatcttaagctttctat 45870264  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 45855836 - 45855761
Alignment:
Q  376 aggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagtt 451  Q
    |||||| ||||||||| ||| |||||| |||||||||    ||||||||||||||||||||||||| ||| |||||    
T  45855836 aggattggaaccatctgcacccatacccgatggaataattaacttcttgcttcaaaattcgccatcggcacaagtt 45855761  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 20994893 - 20994787
Alignment:
Q  20 tttcacacaatgtccagcggttaggacttgaggtcaatggtgacatcgggaacattccgcttagcgtattttcatgtcagactttaacacatcttaagct 119  Q
    |||||||||||||||||| ||||  ||||   |||| | ||||||| | | | ||||| | |||| ||||||||| |||| |||||||||||||| ||||    
T  20994893 tttcacacaatgtccagcagttacaactttgtgtcacttgtgacattgcgcaaattcctcatagcttattttcatttcagcctttaacacatcttgagct 20994794  T
Q  120 ttctatt 126  Q
    |||||||    
T  20994793 ttctatt 20994787  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 512
Target Start/End: Complemental strand, 20980550 - 20980437
Alignment:
Q  399 tacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttata 498  Q
    |||||||||| |||  ||||||||||| ||||||||||||  ||||| ||||||| ||| |||||||| |||   || || ||| | ||| | |||||||    
T  20980550 tacctgatgggatagtggacttcttgcgtcaaaattcgcccacagcaaaagttgacttcatagattgcacaaaaaaatctgttagaccaaaacatttata 20980451  T
Q  499 attggtttgttttt 512  Q
    |||||||| |||||    
T  20980450 attggtttattttt 20980437  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 45869967 - 45869858
Alignment:
Q  160 gcattagactaatccatttgcacccttcattgcctaggttctttccttatctcctagtctgttgaactataatctactttccttgggtaacttgaagtca 259  Q
    |||||||||||||||  ||||| || || |||| |||| ||| |||||   ||||  |||||| ||   |||||| | ||||||||||||||||||||||    
T  45869967 gcattagactaatccgcttgcatccctcgttgcttaggctctctccttcattcctgatctgttcaagattaatctcccttccttgggtaacttgaagtca 45869868  T
Q  260 ttgaaagtgg 269  Q
    ||||||||||    
T  45869867 ttgaaagtgg 45869858  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 2995354 - 2995315
Alignment:
Q  373 agaaggatttgaaccatcttcactcatacctgatggaata 412  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  2995354 agaaggattggaaccattttcactcatacctgatggaata 2995315  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 45855973 - 45855929
Alignment:
Q  239 tccttgggtaacttgaagtcattgaaagtggtaatggaaccactt 283  Q
    ||||| ||||||||||||||||||||||||  || ||||||||||    
T  45855973 tccttaggtaacttgaagtcattgaaagtgaaaagggaaccactt 45855929  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 45914123 - 45914095
Alignment:
Q  58 ggtgacatcgggaacattccgcttagcgt 86  Q
    |||||||||||||||||||||||||||||    
T  45914123 ggtgacatcgggaacattccgcttagcgt 45914095  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 314 - 470
Target Start/End: Complemental strand, 7975886 - 7975730
Alignment:
Q  314 gtcaagttacagaaacttaagttaaagacaaaagctgctaagttacgaaaagattttgtagaaggatttgaaccatcttcactcatacctgatggaatat 413  Q
    |||| |||||||||| | |||| ||||| | |||||||||||||||||||||  |||  ||| |||||  |||||||||||||||||||||||||||||     
T  7975886 gtcatgttacagaaaatcaagtcaaagaaagaagctgctaagttacgaaaagcatttagagatggattgaaaccatcttcactcatacctgatggaatag 7975787  T
Q  414 aggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaa 470  Q
     ||||||||||||||||||||| || || ||| ||||||| | | |||||| |||||    
T  7975786 tggacttcttgcttcaaaattcaccttcggcaaaagttgactacatagatttctcaa 7975730  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 38141102 - 38141044
Alignment:
Q  377 ggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattc 435  Q
    ||||| ||||||||| ||| ||||||||||||||||  |||||||||| ||||||||||    
T  38141102 ggattggaaccatctgcacccatacctgatggaatagtggacttcttgattcaaaattc 38141044  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 7895931 - 7895983
Alignment:
Q  383 gaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattc 435  Q
    ||||||||| ||| ||||||||||||||||  ||| |||||||||||||||||    
T  7895931 gaaccatctgcacccatacctgatggaatagtggatttcttgcttcaaaattc 7895983  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 7976569 - 7976533
Alignment:
Q  88 ttttcatgtcagactttaacacatcttaagctttcta 124  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7976569 ttttcatgtcatactttaacacatcttaagctttcta 7976533  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 121
Target Start/End: Original strand, 7895317 - 7895350
Alignment:
Q  88 ttttcatgtcagactttaacacatcttaagcttt 121  Q
    |||||||||||| |||||||||||||||||||||    
T  7895317 ttttcatgtcagtctttaacacatcttaagcttt 7895350  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 7976637 - 7976609
Alignment:
Q  20 tttcacacaatgtccagcggttaggactt 48  Q
    |||||||||||||||||||||||||||||    
T  7976637 tttcacacaatgtccagcggttaggactt 7976609  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 435
Target Start/End: Original strand, 3979299 - 3979597
Alignment:
Q  137 ttttattgaaaattaattgactagcattagactaatccatttgcacccttcattgcctaggttctttccttatctcctagtctgttgaactataatctac 236  Q
    ||||||| ||||||||||  || ||||||||||||| || ||||| ||  ||||||||||||||| ||||||| ||||  | | |||||   ||   |||    
T  3979299 ttttattaaaaattaattttcttgcattagactaattcacttgcatcccccattgcctaggttctctccttatatcctgatgttttgaagattagattac 3979398  T
Q  237 tttccttgggtaacttgaagtcattgaaagtggtaatggaaccacttctgtataaaattcgcatggcactgtgtgaagtcaagttacagaaacttaagtt 336  Q
     |||||||  ||||||||||||||||||||||  |||||||  |||| |||||  | |||||||| ||||  | ||  |||||||||||||    || |     
T  3979399 cttccttgcataacttgaagtcattgaaagtgagaatggaagaacttttgtatggatttcgcatgacactaagggatatcaagttacagaacgccaaatc 3979498  T
Q  337 aaagacaaaagctgctaagttacgaaaagattttgtagaaggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattc 435  Q
    ||||| | ||||||||| | |||||||||  |||  |||||| || |||||| |||||| | ||||||||||||||  ||||||||||  |||||||||    
T  3979499 aaagagagaagctgctaggatacgaaaagcatttaaagaagggttggaaccaccttcacccgtacctgatggaatagtggacttcttgtgtcaaaattc 3979597  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 470
Target Start/End: Complemental strand, 36590418 - 36590331
Alignment:
Q  383 gaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaa 470  Q
    ||||||||||||| ||||||||||||||||  |||||| ||| ||||||| || || ||||||||||||||  || ||||| ||||||    
T  36590418 gaaccatcttcacccatacctgatggaatagtggactttttgattcaaaactcaccgtcagcagaagttgacatcatagatagctcaa 36590331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 525
Target Start/End: Complemental strand, 20272859 - 20272818
Alignment:
Q  484 agcaagagatttataattggtttgtttttcgtttccttctct 525  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  20272859 agcaaaagatttataattggtttgttttttgtttccttctct 20272818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 453
Target Start/End: Complemental strand, 20272970 - 20272898
Alignment:
Q  383 gaaccatcttcactcatacctgatggaatata--ggacttcttgcttcaaaattcgccatcagcagaagttga 453  Q
    |||||||||||| |||||||  |||||||||   |||||| ||||||||||||||||||||  ||||||||||    
T  20272970 gaaccatcttcagtcataccaaatggaatattatggactttttgcttcaaaattcgccatcgacagaagttga 20272898  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 3978424 - 3978463
Alignment:
Q  88 ttttcatgtcagactttaacacatcttaagctttctattt 127  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  3978424 ttttcatgtcaggctttaacgcatcttaagctttctattt 3978463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 526
Target Start/End: Complemental strand, 44500270 - 44500129
Alignment:
Q  385 accatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaa 484  Q
    |||||||||||   |||||||| |||||  ||||||||||||||||||||| ||||  ||||||||||| ||| | ||| |||||| || | ||||| ||    
T  44500270 accatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcgctcaaggcgacctctttaa 44500171  T
Q  485 gcaagagatttataattggtttgtttttcgtttccttctctg 526  Q
    |  ||| ||||||||| ||||||||| | ||| |||||||||    
T  44500170 gagagatatttataatcggtttgtttcttgttcccttctctg 44500129  T

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