View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_low_7 (Length: 501)
Name: NF16265_low_7
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_7 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 45419604 - 45420107
Alignment:
| Q |
1 |
ggaggtggtgcccatgcgtcacagtgaagtcaatcatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggattcctgaaat |
100 |
Q |
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||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
45419604 |
ggaggtggtgcacatgcgtcacattgaagtcaaccatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggatacctaaaat |
45419703 |
T |
|
| Q |
101 |
ccatattagcttgaaaaacta----------agacaacttatgcccttctacagataaaactaagaaacaaagaacat--------caatgtagaattca |
182 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
45419704 |
ccatattagcttgaaaaactagttaagactaagacaacttatgcccttctacagataaaactaagaaacaaagaacaaagacattacagtgtagaattca |
45419803 |
T |
|
| Q |
183 |
gttgaagatatcctcta--gattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgtt |
280 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45419804 |
gttgaagatatcctctatagattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgat |
45419903 |
T |
|
| Q |
281 |
gataacttggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccc |
380 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45419904 |
ggtaacctggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccc |
45420003 |
T |
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| Q |
381 |
tccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcccatcatctccccat |
480 |
Q |
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| T |
45420004 |
tccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcacatcatctccccat |
45420103 |
T |
|
| Q |
481 |
aatt |
484 |
Q |
| |
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|||| |
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| T |
45420104 |
aatt |
45420107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 203 - 484
Target Start/End: Original strand, 45410517 - 45410798
Alignment:
| Q |
203 |
tatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaa |
302 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410517 |
tatcctaattaaggggttgaacaatgagtggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaa |
45410616 |
T |
|
| Q |
303 |
agtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaatac |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410617 |
agtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaatac |
45410716 |
T |
|
| Q |
403 |
cccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcccatcatctccccataatt |
484 |
Q |
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| T |
45410717 |
cccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaactcattcacatcatctccccataatt |
45410798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 220 - 453
Target Start/End: Original strand, 29799598 - 29799831
Alignment:
| Q |
220 |
tgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaaagtgaagttagagagaa |
319 |
Q |
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||||| || ||||||||||||| |||||||||||| |||||||| || |||||||| |||| |||| |||| |||||| | || ||||||||| |
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| T |
29799598 |
tgaacgattagaggaagtccataagctggccttagtgagagcataatacaaggtgaatgaatataatttggggaaatattaaaactaaatctagagagaa |
29799697 |
T |
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| Q |
320 |
gtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgca |
419 |
Q |
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| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || || ||||| |
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| T |
29799698 |
gaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggttgca |
29799797 |
T |
|
| Q |
420 |
tccaccattaacatcatccatgaacctctctggt |
453 |
Q |
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||||||||| |||||||||||||| || |||||| |
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| T |
29799798 |
tccaccatttacatcatccatgaatctttctggt |
29799831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 172 - 484
Target Start/End: Original strand, 26834986 - 26835298
Alignment:
| Q |
172 |
tgtagaattcagttgaagatatcctctagattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctg |
271 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26834986 |
tgtagaattgagttgaagatatcctctagattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctg |
26835085 |
T |
|
| Q |
272 |
gtgaatgttgataacttggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacaca |
371 |
Q |
| |
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||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835086 |
gtgaatgatggtaacctggcgaaaccttaaaagtgaagttagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacaca |
26835185 |
T |
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| Q |
372 |
cattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcccatca |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| ||||| |
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| T |
26835186 |
cattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatcgacgaacctctctggtttgaactcattcacatca |
26835285 |
T |
|
| Q |
472 |
tctccccataatt |
484 |
Q |
| |
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||||||||||||| |
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| T |
26835286 |
tctccccataatt |
26835298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26834826 - 26834946
Alignment:
| Q |
1 |
ggaggtggtgcccatgcgtcacagtgaagtcaatcatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggattcctgaaat |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26834826 |
ggaggtggtgcacatgcgtcacagtgaagtcaatcatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggattcctaaaat |
26834925 |
T |
|
| Q |
101 |
ccatattagcttgaaaaacta |
121 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26834926 |
ccatattagcttgaaaaacta |
26834946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 316 - 455
Target Start/End: Original strand, 63457 - 63596
Alignment:
| Q |
316 |
agaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtt |
415 |
Q |
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||||||| ||||||||||| || |||||||| || ||||||| ||||||| ||| |||||||||||| |||||||| || |||||||| |||| | |
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| T |
63457 |
agaagtagggttaacactatgttatactccatgaagatcaagttcctaccaatacatgctctccctccaaaaccaaaaggcaagtaccccattgtgtggt |
63556 |
T |
|
| Q |
416 |
tgcatccaccattaacatcatccatgaacctctctggttt |
455 |
Q |
| |
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|||| | ||||| |||||| |||||||||||||||||| |
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| T |
63557 |
ggcattccccattggcatcattcatgaacctctctggttt |
63596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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