View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_low_9 (Length: 482)
Name: NF16265_low_9
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 31371931 - 31372376
Alignment:
| Q |
16 |
atgcagtttttggcgatgattggttacaaaaaatcagagcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataaggtgttagaatt |
115 |
Q |
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| T |
31371931 |
atgcagtttttggcgatgattggttacaaaaaatcagagcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataaggtgttagaatt |
31372030 |
T |
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| Q |
116 |
tttgaagttggatatcaatgattccatggaagttaattttgtagtagatttgattaaagaaaagattagtttgtttaacaagcactttacagagacatgc |
215 |
Q |
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| T |
31372031 |
tttgaagttggatatcaatgattccatggaagttaattttgtagtagatttgattaaagaaaagattagtttgtttaacaagcactttacagagacatgc |
31372130 |
T |
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| Q |
216 |
agagttcagtgcacatggtccattcattattataagctaaggaaagaaatgattgaatctctcaagaataccttgctcccagcgtatggaatcttcattg |
315 |
Q |
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| T |
31372131 |
agagttcagtgcacatggtccattcattattataagctaaggaaagaaatgattgaatctctcaagaataccttgctcccagcgtatggaatcttcattg |
31372230 |
T |
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| Q |
316 |
ggaggtttcaggattttcttaaaactgatgcttatgagtatattgagtatggaatgtttgacattcatgacatacttgataatttgtttcttggaaacaa |
415 |
Q |
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| T |
31372231 |
ggaggtttcaggattttcttaaaactgatgcttatgagtatattgagtatggaatgtttgacattcatgacatacttgataatttgtttcttggaaacaa |
31372330 |
T |
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| Q |
416 |
gaaagacaaatgaattgtttggtttgtgatcacaaatttatgtatg |
461 |
Q |
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| T |
31372331 |
gaaagacaaatgaattgtttggtttgtgatcacaaatttatgtatg |
31372376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 6 - 461
Target Start/End: Original strand, 31324490 - 31324945
Alignment:
| Q |
6 |
agtgagatgaatgcagtttttggcgatgattggttacaaaaaatcagagcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataagg |
105 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31324490 |
agtgatatggatgcagtttttggcgatgattggttacaaaaaatcagagcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataagg |
31324589 |
T |
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| Q |
106 |
tgttagaatttttgaagttggatatcaatgattccatggaagttaattttgtagtagatttgattaaagaaaagattagtttgtttaacaagcactttac |
205 |
Q |
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| T |
31324590 |
tgttagaatttttgaagttggatatcaatgattccatggaagttaattttgtagtagatttgatgaaagaaaagattagtttgtttaacaagcactttac |
31324689 |
T |
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| Q |
206 |
agagacatgcagagttcagtgcacatggtccattcattattataagctaaggaaagaaatgattgaatctctcaagaataccttgctcccagcgtatgga |
305 |
Q |
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| T |
31324690 |
agagacatgcagagttcagtgcacatggtccattcattattataagctaaggaaagaaatgattgaatctctcaagaataccttgctcccagcgtatgga |
31324789 |
T |
|
| Q |
306 |
atcttcattgggaggtttcaggattttcttaaaactgatgcttatgagtatattgagtatggaatgtttgacattcatgacatacttgataatttgtttc |
405 |
Q |
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| T |
31324790 |
atcttcattgggaggtttcaggattttcttaaaactgatgcttatgagtatattgagtatggaatgtttgacattcatgacatacttgataatttgtttc |
31324889 |
T |
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| Q |
406 |
ttggaaacaagaaagacaaatgaattgtttggtttgtgatcacaaatttatgtatg |
461 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
31324890 |
ttggaaacaagaaaaacaaatgaattgtttggtttgttatcacaaatttatgtatg |
31324945 |
T |
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