View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16266_high_1 (Length: 594)
Name: NF16266_high_1
Description: NF16266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16266_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 99 - 508
Target Start/End: Original strand, 25901698 - 25902107
Alignment:
| Q |
99 |
gatgcaggattaattagggattttcaccnnnnnnncaataacaattggatccttcaacacagattaatttcaaaagggtacacttttttcttttcaattt |
198 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901698 |
gatgcaggattaattagggattttcaccaaaaaaacaataacaattggatccttcaacacagattaatttcaaaagggtacacttttttcttttcaattt |
25901797 |
T |
|
| Q |
199 |
acatagatatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggtttaagatctatggatcaacaaca |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901798 |
acatagatatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggtttaagatctatggatcaacaaca |
25901897 |
T |
|
| Q |
299 |
tgatacaaactgtataaatcaagatcattgatgctataaaaaattccatttatcttccgcattgttctttagctatattgactctattcattttgagtac |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901898 |
tgatacaaactgtataaatcaagatcattgatgctataaaaaattccatttatcttccgcattgttctttagctatattgactctattcattttgagtac |
25901997 |
T |
|
| Q |
399 |
tctactgtatttttctgtcatcatttatttnnnnnnntgtcaccaagaaatgtttaaatttctttcaacttctcaacttatatgtgggagctataaaatt |
498 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901998 |
tctactgtatttttctgtcatcatttatttaaaaaaatgtcacaaagaaatgtttaaatttctttcaacttctcaacttatatgtgggagctataaaatt |
25902097 |
T |
|
| Q |
499 |
agaaccaact |
508 |
Q |
| |
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|||||||||| |
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| T |
25902098 |
agaaccaact |
25902107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 179 - 312
Target Start/End: Original strand, 1511522 - 1511655
Alignment:
| Q |
179 |
cacttttttcttttcaatttacatagatatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggttta |
278 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||| | |
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| T |
1511522 |
cacttttttcttttcattttacatagatatgttgacagtatgagaatggttgaatgatcatgacatggcagtatgagctaggttctatgagattggtgca |
1511621 |
T |
|
| Q |
279 |
agatctatggatcaacaacatgatacaaactgta |
312 |
Q |
| |
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|||||| |||||| ||| |||||| |||| |||| |
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| T |
1511622 |
agatctctggatctacaccatgatgcaaattgta |
1511655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 25901616 - 25901661
Alignment:
| Q |
17 |
caacccttgtgtctgcactcctctccacctcaaactgcaaagtaac |
62 |
Q |
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| T |
25901616 |
caacccttgtgtctgcactcctctccacctcaaactgcaaagtaac |
25901661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 179 - 422
Target Start/End: Complemental strand, 2437707 - 2437466
Alignment:
| Q |
179 |
cacttttttcttttcaatttacatagatatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggttta |
278 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
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|
| T |
2437707 |
cacttttttcttttcaatttacata--tatgttgacagtatgagaatggctgaatgatcatggcatgatagtatgagctaggttctatgagactggttta |
2437610 |
T |
|
| Q |
279 |
agatctatggatcaacaacatgatacaaactgtataaatcaagatcattgatgctataaaaaattccatttatcttccgcattgttctttagctatattg |
378 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||| ||| || ||||||| |||| ||||||||||||||||||||| |
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| T |
2437609 |
agatctatggatctacaacatgatacaaactgtataactcaagctcagagatgctatacaaattttcatttatattcctcattgttctttagctatattg |
2437510 |
T |
|
| Q |
379 |
actctattcattttgagtactctactgtatttttctgtcatcat |
422 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2437509 |
actgtattcattttgagtactccactgtatttttctgtcatcat |
2437466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 179 - 392
Target Start/End: Complemental strand, 27537701 - 27537485
Alignment:
| Q |
179 |
cacttttttcttttcaatttacataga--tatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggtt |
276 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||| |
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| T |
27537701 |
cacttttttctttacattttacatagagatatgttggcagtatgagaatggctgaatgatcatggcatgacagtatgagataggttctatgagattggtg |
27537602 |
T |
|
| Q |
277 |
taagatctatggatcaacaacatgatacaaactgtataaatcaagatcattgatgctataaaaaattccatttatcttccgcattgttctttagctata- |
375 |
Q |
| |
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||||||| |||||| |||||||||| |||| |||||| ||||| ||| ||||||||| ||| || ||||| | |||| |||||||||||||||||| |
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| T |
27537601 |
caagatctctggatctacaacatgatgcaaattgtatatctcaaggtcacagatgctatacaaattttcatttgtattcctcattgttctttagctatat |
27537502 |
T |
|
| Q |
376 |
ttgactctattcatttt |
392 |
Q |
| |
|
|||||| |||||||||| |
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|
| T |
27537501 |
ttgactgtattcatttt |
27537485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 10821972 - 10822026
Alignment:
| Q |
508 |
ttatatatgattcttatacttaaccaactgctcacatgaaagctaacaattagaa |
562 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
10821972 |
ttatatatgattgttatatttaaccaactgctcacatgaaagcaaacaattagaa |
10822026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 52002635 - 52002680
Alignment:
| Q |
17 |
caacccttgtgtctgcactcctctccacctcaaactgcaaagtaac |
62 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
52002635 |
caacccttgtgtccgcgctcctctccacctcaaactgcaaagtaac |
52002680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 52002716 - 52002752
Alignment:
| Q |
141 |
aattggatccttcaacacagattaatttcaaaagggt |
177 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
52002716 |
aattggatccttcaacacagattaatttcaaaagggt |
52002752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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