View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16266_high_3 (Length: 494)
Name: NF16266_high_3
Description: NF16266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16266_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 29006910 - 29006441
Alignment:
| Q |
18 |
ctatccattcttattaaataattgaatcaaattacaattgatgttataattttaattagccaaaaattccatgctagtctgagtggcatgtacttgaaat |
117 |
Q |
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| T |
29006910 |
ctatccattcttattaaataattgaatcaaattacaattggtgttataattttaattagccaaaaattccatgctagtctgagtggcatgtacttgaaat |
29006811 |
T |
|
| Q |
118 |
ggtttcatcagagcatttggataatgtgattactgatacatatctctttcagctttagtggtcgtgtgtttgaacaaactggtctaaaatttcaacaatg |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29006810 |
ggtttcatcaaagcatttggataatgtgattactgatacatatctctttcagctttagtggtcgtgtgtttgaacaatctggtctaaaatttcaacaatg |
29006711 |
T |
|
| Q |
218 |
ttaaaactcataaggagtattttgcagtcaattgtcattctactcaatttagagattagtgtttgctgctgtgctagagaatatccaatttttgaagaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006710 |
ttaaaactcataaggagtattttgcagtcaattgtcattctactcaatttagagattagtgtttgctgctgtgctagagaatatccaatttttgaagaaa |
29006611 |
T |
|
| Q |
318 |
aaattgtttcacctaatgaaatgaacttctccaaatcatttttaatgggtatacatgtaacatataggtaggtttaattgataaatagttgattcatggt |
417 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29006610 |
aaattgtttcacctaatgaaatgaaattctccaaatcatttttaatgggtaaacatgtaacatataggttggtttaattgataaatagttgattcatggt |
29006511 |
T |
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| Q |
418 |
ccttaaagggagtaggttcaactcccatccccttcgtcaggactctaaatcttgattcatgcctttgcta |
487 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29006510 |
ccttaaagggagtagattcaactcccatccccttcgtcaggactctaaatcttgattcatgccattgcta |
29006441 |
T |
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