View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16266_high_5 (Length: 410)
Name: NF16266_high_5
Description: NF16266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16266_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 29006062 - 29006471
Alignment:
| Q |
1 |
atcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggccccgacataaaaaataaataatgaatccaaagacaag |
100 |
Q |
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| T |
29006062 |
atcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggccccgacataaaaaataaataatgaatccaaagacaag |
29006161 |
T |
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| Q |
101 |
ggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgtttatggtgataataatgtctaaatattcattaagaag |
200 |
Q |
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| T |
29006162 |
ggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgtttatggtgataataatgtctaaatattcattaagaag |
29006261 |
T |
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| Q |
201 |
aatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtctcttttcttattaaacactaatggaaacaactcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006262 |
aatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtctcttttcttattaaacactaatggaaacaactcaca |
29006361 |
T |
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| Q |
301 |
aaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaataggaacaagttgaagcaaactagcaatggcatgaatcaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006362 |
aaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaataggaacaagttgaagcaaactagcaatggcatgaatcaaga |
29006461 |
T |
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| Q |
401 |
tttagagtcc |
410 |
Q |
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| T |
29006462 |
tttagagtcc |
29006471 |
T |
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