View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16266_high_8 (Length: 252)
Name: NF16266_high_8
Description: NF16266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16266_high_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 187602 - 187367
Alignment:
| Q |
17 |
atgaagacttctaccacgcgtttccactaactatgtaaatgtgattggttttaattgatcttaaagacaacctacaaattttcactcatttcttctaaat |
116 |
Q |
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| T |
187602 |
atgaagacttctaccacgcgtttccactaactatgtacatgtgattggttttaattgatttcaaagacaacctacaaattttcactcatttcctttaaat |
187503 |
T |
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| Q |
117 |
ctcatgctataaacatcttcattatgagaaatgtacacgtttcgttatgttaaacctctcacttacctcaatcgacttgaacgttaaattgtttgtaagt |
216 |
Q |
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| T |
187502 |
cccatgctataaacatcttcattatgagaaatgtacacgtttcgttatgttaaacctctcacttacctcaatcgacttgaacgttaaattgtttgtaggt |
187403 |
T |
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| Q |
217 |
atcacaccgttatgagtcatgcttccatcaactccg |
252 |
Q |
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| T |
187402 |
atcacaccgttatgagtcatgcttccatcaactccg |
187367 |
T |
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