View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16266_low_11 (Length: 239)
Name: NF16266_low_11
Description: NF16266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16266_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 49824827 - 49825038
Alignment:
| Q |
10 |
gtagcatagggacaacgaatgggtcgtttttaaacatgaagaaaaaatttgattgtattataatataggtaatgttacctccactggcgtgtcaccggat |
109 |
Q |
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| T |
49824827 |
gtagaataaggacaacgaatgggtcgtttttaaacatgaagaaaaaatttgattatattatagtataggtaatgttacctccactggcgtgtcaccggat |
49824926 |
T |
|
| Q |
110 |
agattcagcatattgtcgtgtgtatcttcgtctatatcttcatgaccaaccttcatnnnnnnnnctcacttgataagtaaaaaataaactacattatata |
209 |
Q |
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| T |
49824927 |
agattcagcatattgtcgtgtgtatcttcgtctatatcttcatgaccaaccttcataaaaaaaacttacttgataagtaaaaaataaactacattatata |
49825026 |
T |
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| Q |
210 |
atctgtatatgg |
221 |
Q |
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|||||||||||| |
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| T |
49825027 |
atctgtatatgg |
49825038 |
T |
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