View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16266_low_12 (Length: 238)
Name: NF16266_low_12
Description: NF16266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16266_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 14591809 - 14591588
Alignment:
| Q |
17 |
acttcaaactaggaaatgcacgcggactacctattcatcgacgattccaactcatgattttcatggcttatgcggattggacttcaggtcctgctcttac |
116 |
Q |
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| T |
14591809 |
acttcaaactaggaaatgtatgcggactacctattcatcgacaattccaactcatgattttcatggcttatgcggattggacttcaggtcctgctcttac |
14591710 |
T |
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| Q |
117 |
atcattttcctcaaatacaagattgttaaggcaggattattcttaacggacatgacaataaagacactcatcaacggacatgattttcaaatcgaatcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14591709 |
atcattttcctcaaatacaagattgttaaggcaggattattcttaacggacatgacaataaagacactcatcaacggacatgattttcaaattgaatcaa |
14591610 |
T |
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| Q |
217 |
tcctgctcttaattcattgaac |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
14591609 |
tcctgctcttaattcattgaac |
14591588 |
T |
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