View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16266_low_3 (Length: 585)
Name: NF16266_low_3
Description: NF16266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16266_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 20 - 575
Target Start/End: Original strand, 45318722 - 45319277
Alignment:
| Q |
20 |
gtagagactgagaaaattgaggctgaagatgatgatgataagaaaacaaatcctactgataaccaggtggagcctgagaaaattgaggctgaatatgatg |
119 |
Q |
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| T |
45318722 |
gtagagactgagaaaattgaggctgaagatgatgatgataagaaaacaaatcctactgataaccaggtggagcctgagaaaattgaggctgaatatgatg |
45318821 |
T |
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| Q |
120 |
ataagaaagcaaatcctaacgagggaataactatcacaaaaggtccggctaagattctttcacgttatcttcgtgatcgtgcgagttcctgccatgattt |
219 |
Q |
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| T |
45318822 |
ataagaaagcaaatcctaacgagggaataactatcacaaaaggtccggctaagattctttcacgttatcttcgtgatcgtgcgagttcctgccatgattt |
45318921 |
T |
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| Q |
220 |
atgcaaatatggtattcagcatgccactgaaacaaaaccatggattacatcacagaaaaggagggaaaggaaaaccaatgtttcaggagaaattgtaatt |
319 |
Q |
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| T |
45318922 |
atgcaaatatggtattcagcatgccactgaaacaaaaccatggagtacatcacagaaaaggagggaaaggaaaaccaatgtttcaggagaaattgtaatt |
45319021 |
T |
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| Q |
320 |
tcgttggaagggacaaagaaatcaagaagaagttcaaatgcttctcctctagcttcaaaacatgcagatcccaactatattgttgacatcaaggaagtaa |
419 |
Q |
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| T |
45319022 |
tcgttggaagggacaaagaaatcaagaagaagttcaaatgcttctcctctagcttcaaaacatgcagatcccaactatattgttgacatcaaggaagtaa |
45319121 |
T |
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| Q |
420 |
caaatgaaaaaacaccctttgaagaaacaaatgtgtccatggaacacagtaacagtgacatagtccaagcaagttctaaaccatattctctccatgtgaa |
519 |
Q |
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| T |
45319122 |
caaatgaaaaaacaccctttgaagaaacaaatgtgtccatggaacacagtaacagtgacatagtccaagcaagttctaaaccatattctctccatgtgaa |
45319221 |
T |
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| Q |
520 |
gaaacgttccaaaagtcaaacagaaggggatttggtgaaaaacaaatgtgcctttg |
575 |
Q |
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| T |
45319222 |
gaaacgttccaaaagtcaaacagaaggggatttggtgaaaaacaaatgtgcctttg |
45319277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 45318627 - 45318709
Alignment:
| Q |
21 |
tagagactgagaaaattgaggctgaagatgatgatgataagaaaacaaatcctactgataaccaggtggagcctgagaaaatt |
103 |
Q |
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| T |
45318627 |
tagagcctgagaaaattgaggccgaagaagatgatgataagaaagcaacgcctactcttaaccaggtggagtctgagaaaatt |
45318709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 45318421 - 45318470
Alignment:
| Q |
88 |
ggagcctgagaaaattgaggctgaatatgatgataagaaagcaaatccta |
137 |
Q |
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| T |
45318421 |
ggagcctgagaaaattgaggctgaaaatgatgagaagaaagcaaatccta |
45318470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 45318315 - 45318371
Alignment:
| Q |
81 |
accaggtggagcctgagaaaattgaggctgaatatgatgataagaaagcaaatccta |
137 |
Q |
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| T |
45318315 |
accaggtggagtctgagaaaattgaggctgaagatgatgataagaaaaaaaatccta |
45318371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 45318499 - 45318547
Alignment:
| Q |
73 |
tactgataaccaggtggagcctgagaaaattgaggctgaatatgatgat |
121 |
Q |
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| T |
45318499 |
tactgttaaccaggtagagcctgagaaaattgaggctgaagatgatgat |
45318547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 45318327 - 45318388
Alignment:
| Q |
27 |
ctgagaaaattgaggctgaagatgatgatgataagaaaacaaatcctactgataaccaggtggag |
91 |
Q |
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| T |
45318327 |
ctgagaaaattgaggctgaa---gatgatgataagaaaaaaaatcctactataaaccaggtggag |
45318388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 45318426 - 45318499
Alignment:
| Q |
27 |
ctgagaaaattgaggctgaagatgatgatgataagaaaacaaatcctactgataaccaggtggagcctgagaaaatt |
103 |
Q |
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| T |
45318426 |
ctgagaaaattgaggctgaaaatgatgag---aagaaagcaaatcctacagttaaccaggtggagtcggagaaaatt |
45318499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 45318512 - 45318550
Alignment:
| Q |
20 |
gtagagactgagaaaattgaggctgaagatgatgatgat |
58 |
Q |
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| T |
45318512 |
gtagagcctgagaaaattgaggctgaagatgatgatgat |
45318550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 45318717 - 45318776
Alignment:
| Q |
81 |
accaggtggagcctgagaaaattgaggctgaa---tatgatgataagaaagcaaatccta |
137 |
Q |
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| T |
45318717 |
accaggtagagactgagaaaattgaggctgaagatgatgatgataagaaaacaaatccta |
45318776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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