View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16266_low_5 (Length: 437)
Name: NF16266_low_5
Description: NF16266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16266_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 72 - 423
Target Start/End: Complemental strand, 38127771 - 38127420
Alignment:
| Q |
72 |
aagtcaatagggtcacacgtagccttgctagagcctccttatcctatactagtccccatgatttctatgatgtaccattatttcttgatcattttgatca |
171 |
Q |
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| T |
38127771 |
aagtcaataaggtcacatgtagccttgctagagcctccttatcctatactagtccccatgatttctatgatgtaccgttatttcttgatcattttgatca |
38127672 |
T |
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| Q |
172 |
cagatgaaattaattcattttactttctctnnnnnnnnnnnngtaatactctaacaaaacataaataaacaatcacattcattcatcaaacggaagacat |
271 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
38127671 |
cagatgaaattaattcattttactttctctaaaaaagaaaaagtaatactctaacaaaacataaataaacaatcatattcattcatcaaacgtaagacat |
38127572 |
T |
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| Q |
272 |
cacaaggcgtttgtcaggaagtacttgggacctttcagcaaaacataaatactaacattcatccaaaatgtcaacaggtactcaaagacctttcagcaaa |
371 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38127571 |
cacaaggcgtatgtcaggaagtacttgggacctttcagcaaaacataaatactaacattcatccaaaatgtcaacaggtactcaaagacctttcagcaaa |
38127472 |
T |
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| Q |
372 |
tgtagccaataagcatcgacaaagtttaccactaacactaataagttttatt |
423 |
Q |
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| T |
38127471 |
tggagccaacaaacatcgacaaagtttaccactaacactaataagttttatt |
38127420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 38128067 - 38127995
Alignment:
| Q |
5 |
cagaacacagatggttgaaaccccctgaagtaatgtcgattcgcccacacaaattggtcatcaagtaaagtca |
77 |
Q |
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| T |
38128067 |
cagaacacagatggttgaaaacccctgaagtaatgtcgattcgcccacacaaattggtcatcaagtaaagtca |
38127995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 43970089 - 43970142
Alignment:
| Q |
96 |
ttgctagagcctccttatcctatactagtccccatgatttctatgatgtaccat |
149 |
Q |
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|||||||||| ||||||||| || |||| |||||| ||||||||||||||||| |
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| T |
43970089 |
ttgctagagcgtccttatccaatcctagcccccatattttctatgatgtaccat |
43970142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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