View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16267_high_1 (Length: 490)
Name: NF16267_high_1
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 31775655 - 31776117
Alignment:
| Q |
18 |
gaaagttacaaccaaatcgatttttaacacataaaaagaaccgatcaagagttacaatccgatcatgaatgaaattcagatgtctaaagagcaattgtct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31775655 |
gaaagttacaaccaaatcgatttttaacacataaaaagagccgatcaagagttacaatccgatcatgaacgaaattcagatgtctaaagagcaattgtct |
31775754 |
T |
|
| Q |
118 |
atcttttgcttatacactaaccctattcatataacctgcaagtttaagcgacccgattaaaagagattgactagcacagataccctcgtacgtagcttag |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
31775755 |
atcttttgcgtatacactaaccctattcatataacctgcaagtttaagcgacccgattaaaagagattgactagcacggatatcctcgtacgtagcttag |
31775854 |
T |
|
| Q |
218 |
gttttattctcacaa---tattataacacacacgggtaagtctgtgttcaaggttctattattggttagcacattaaattaaaataaagtaacaagtgaa |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31775855 |
gttttattctcacaatattattataacacacacgggtaagtctgtgttcaaggttctattattggttagcacattaaattaaaataaagtaacaagtgaa |
31775954 |
T |
|
| Q |
315 |
aaatcttatttttcccagaacatacatacattgatgcatttgtgccccccacaacttctcattttgtagcatgacacttggattttttggtttgtcttca |
414 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31775955 |
aaatctta-ttttcccagaacatacatacattgatgcatttgtgccccccacaacttctcattttgtagcatgacacttggattttttggtttgtcttca |
31776053 |
T |
|
| Q |
415 |
tatgttgtctttctgaaagcaatcttcctctcattatcaaactttgtcctacgaatcctatgct |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31776054 |
tatgttgtctttctgaaagcaatcttcctctcattatcaaactctgtcctacgaatcctatgct |
31776117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University