View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16267_high_10 (Length: 394)
Name: NF16267_high_10
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_high_10 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 225 - 394
Target Start/End: Complemental strand, 28115898 - 28115728
Alignment:
| Q |
225 |
attgcggttacatctttcacatttgtctgtaacattaaggatgacaagacaactataacttaaaacactgattttgtacctatgttattgataagtatt- |
323 |
Q |
| |
|
|||| |||| |||| ||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
28115898 |
attgtggttgcatcattcacatttgtctataacattaaggaggacaaggcaaccgtaacttaaaacactgattttgtacccttgttatagataagtattt |
28115799 |
T |
|
| Q |
324 |
ttttggtataattaggaaattaaaatgtaagatcaaaattaacttgattctatttgaaggattgagcattt |
394 |
Q |
| |
|
|||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28115798 |
tttttgtataactaagaaattaaaatgtgagatcaaaattaacttgattctatttgaaggattgagcattt |
28115728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 28116327 - 28116180
Alignment:
| Q |
98 |
aaattcctaaatattacttccacaacattataaacaagaagaaaccacacaaacaaatgtttagtataattgtggtatgca-----------acttacaa |
186 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| || || ||||| |
|
|
| T |
28116327 |
aaattcttaaatattacatacacaacattataaacaagaagaaaccacatagacaaatgtttagtataattgaggtattcaaccacaatcacacctacaa |
28116228 |
T |
|
| Q |
187 |
cgttaaggctttgtaggcctttgcaaccgcaatgcagcattgcggtta |
234 |
Q |
| |
|
| ||||| ||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
28116227 |
cattaagtctttggaggtctttgcaaccgcaatccagcattgcggtta |
28116180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University