View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16267_high_3 (Length: 461)

Name: NF16267_high_3
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16267_high_3
NF16267_high_3
[»] chr3 (8 HSPs)
chr3 (81-449)||(25085035-25085395)
chr3 (249-450)||(24982042-24982243)
chr3 (223-450)||(24923419-24923646)
chr3 (89-450)||(24919697-24920072)
chr3 (239-450)||(24497234-24497445)
chr3 (240-449)||(31825533-31825742)
chr3 (249-449)||(21584582-21584782)
chr3 (245-286)||(14858629-14858670)
[»] chr7 (4 HSPs)
chr7 (252-449)||(10575384-10575581)
chr7 (257-443)||(39954838-39955024)
chr7 (304-449)||(354401-354547)
chr7 (338-449)||(10580784-10580895)
[»] chr8 (1 HSPs)
chr8 (249-449)||(14261017-14261217)
[»] chr2 (1 HSPs)
chr2 (280-422)||(41027596-41027738)
[»] chr4 (3 HSPs)
chr4 (274-446)||(22898553-22898725)
chr4 (274-446)||(22950221-22950393)
chr4 (257-443)||(53328717-53328903)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 81 - 449
Target Start/End: Complemental strand, 25085395 - 25085035
Alignment:
Q  81 gtacttcatttcattatatttcaatatgtgtaaaactgaataagcttcgatctaattcagaatcaattgtcacatattaccctaaacatcaatgaagctt 180  Q
    |||||||||||||||||||||||| ||     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25085395 gtacttcatttcattatatttcaa-at-----aaactgaataagcttcgatctaattgagaatcaattgtcacatattaccctaaacatcaatgaagctt 25085302  T
Q  181 tctaatgtgcaattgcaagtctaaggcaaaagaaaataacatataaactaaagagtgtttcttctttgtcttcttcaacctccgaaaccatagagggttc 280  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  25085301 tctaatgtgcaattacaagtctaaggcaaaagaaaataacaaataaactaaagagtgtttcttct--gtcttcttcaacctccaaaaccatagagggttc 25085204  T
Q  281 ttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaa 380  Q
    |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||    
T  25085203 ttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaa 25085104  T
Q  381 gaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttct 449  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25085103 gaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttct 25085035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 249 - 450
Target Start/End: Complemental strand, 24982243 - 24982042
Alignment:
Q  249 tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg 348  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  24982243 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 24982144  T
Q  349 tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttc 448  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  24982143 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttc 24982044  T
Q  449 tt 450  Q
    ||    
T  24982043 tt 24982042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 223 - 450
Target Start/End: Original strand, 24923419 - 24923646
Alignment:
Q  223 ataaactaaagagtgtttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaa 322  Q
    ||||||||||||||||||||||||  | ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| || |    
T  24923419 ataaactaaagagtgtttcttcttcatattcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtca 24923518  T
Q  323 cagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaacc 422  Q
    | |||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24923519 ctgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaacc 24923618  T
Q  423 actgattctcttcacaccacctcttctt 450  Q
    |||||||||||| |||||||||||||||    
T  24923619 actgattctcttaacaccacctcttctt 24923646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 89 - 450
Target Start/End: Original strand, 24919697 - 24920072
Alignment:
Q  89 tttcattatatttcaatatgtgtaaaactgaataagcttcgatctaattcagaatcaattgtcacatattaccctaaacatcaatgaagctttctaatgt 188  Q
    |||||||| |||||||||| | | |||||||| ||| ||||||||| |  ||||||| || | |||||||||||||||||||| |||| |||||||| ||    
T  24919697 tttcattagatttcaatatttctgaaactgaaaaagtttcgatctactcgagaatcacttataacatattaccctaaacatcattgaaactttctaaggt 24919796  T
Q  189 gcaattgca------------agtctaaggcaaaagaaaataacatataaactaaagagtgtttcttctttgtcttct---tcaacctccgaaaccatag 273  Q
    |||||||||            |||||||||||||| ||||||| | |||||||||| |||| ||||||||  |||||    |||||||||||| ||||||    
T  24919797 gcaattgcatattcaaattaaagtctaaggcaaaataaaataaaaaataaactaaa-agtgcttcttcttcatcttcagcatcaacctccgaatccatag 24919895  T
Q  274 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacat 373  Q
    ||||||||||| || ||||||||||||||||| ||||||||||| || || ||||||||||| || |||||||||||||| || ||||||||||||||||    
T  24919896 agggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacat 24919995  T
Q  374 tttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttctt 450  Q
    | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24919996 tctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttctt 24920072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 239 - 450
Target Start/End: Original strand, 24497234 - 24497445
Alignment:
Q  239 ttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgc 338  Q
    ||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  24497234 ttcttgtttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgc 24497333  T
Q  339 atgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcaca 438  Q
     |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  24497334 gtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaaca 24497433  T
Q  439 ccacctcttctt 450  Q
    ||||||||||||    
T  24497434 ccacctcttctt 24497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 240 - 449
Target Start/End: Original strand, 31825533 - 31825742
Alignment:
Q  240 tcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgca 339  Q
    |||||||  ||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| ||     
T  31825533 tcttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcg 31825632  T
Q  340 tgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacac 439  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  31825633 tgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacac 31825732  T
Q  440 cacctcttct 449  Q
    ||||||||||    
T  31825733 cacctcttct 31825742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 249 - 449
Target Start/End: Original strand, 21584582 - 21584782
Alignment:
Q  249 tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg 348  Q
    |||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  349 tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttc 448  Q
    || ||||| ||||||||||| ||||| |||||||| ||||| |  || ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T
Q  449 t 449  Q
    |    
T  21584782 t 21584782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 14858629 - 14858670
Alignment:
Q  245 tttgtcttcttcaacctccgaaaccatagagggttcttcctt 286  Q
    |||||||||||||||| || ||||| ||||||||||||||||    
T  14858629 tttgtcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 252 - 449
Target Start/End: Complemental strand, 10575581 - 10575384
Alignment:
Q  252 tcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtat 351  Q
    ||||||||| |||||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| ||||||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  352 gtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttct 449  Q
    ||||| ||||| |  || ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttct 10575384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 257 - 443
Target Start/End: Original strand, 39954838 - 39955024
Alignment:
Q  257 aacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaac 356  Q
    |||| |||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  357 tgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacc 443  Q
     ||||||||||| ||||| || |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||||||||||||    
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc 39955024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 304 - 449
Target Start/End: Complemental strand, 354547 - 354401
Alignment:
Q  304 acaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctgg 403  Q
    ||||||||||| || || | ||||||||||||||||||||||||||| ||||| ||||||| |||  |||| | |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  404 tttcttcataga-tcaaaccactgattctcttcacaccacctcttct 449  Q
    |||| ||||||| | ||||||||||| ||||||||||||||||||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttct 354401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 10580895 - 10580784
Alignment:
Q  338 catgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcac 437  Q
    ||||||||||||| ||||| |||||| ||||   ||| | |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||||||    
T  10580895 catgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcac 10580796  T
Q  438 accacctcttct 449  Q
    |||| |||||||    
T  10580795 accaactcttct 10580784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 249 - 449
Target Start/End: Original strand, 14261017 - 14261217
Alignment:
Q  249 tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg 348  Q
    |||||||||||||||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  349 tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttc 448  Q
    || ||||| ||||| |  || ||||| |||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||||||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T
Q  449 t 449  Q
    |    
T  14261217 t 14261217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 422
Target Start/End: Complemental strand, 41027738 - 41027596
Alignment:
Q  280 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttcca 379  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| ||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  380 agaagatcttcaagacacctctggtttcttcatagatcaaacc 422  Q
    | ||||||||||| || || |  || ||||| |||||||||||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc 41027596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 446
Target Start/End: Complemental strand, 22898725 - 22898553
Alignment:
Q  274 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacat 373  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| || || ||||||||||| || || ||||| | ||| ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  374 tttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctct 446  Q
    | ||||| || |||||||| || || |  || || ||||| |||||||||||||| | |||||| || |||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctct 22898553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 446
Target Start/End: Complemental strand, 22950393 - 22950221
Alignment:
Q  274 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacat 373  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| || || ||||||||||| || || ||||| | ||| ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  374 tttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctct 446  Q
    | ||||| || |||||||| || || |  || || ||||| |||||||||||||| | |||||| || |||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctct 22950221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 443
Target Start/End: Complemental strand, 53328903 - 53328717
Alignment:
Q  257 aacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaac 356  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| |  |  |||||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  357 tgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacc 443  Q
     ||||||||||| ||||| || |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||||||||||||    
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 53328717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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