View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16267_high_4 (Length: 461)
Name: NF16267_high_4
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 50224580 - 50224149
Alignment:
| Q |
17 |
gaataatacaaaagggaataaacaatcttcaaatcagcaaaagaatcaataaaaagatgataaacatagaagtaccctgcagtaatacttgaattttgtg |
116 |
Q |
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| T |
50224580 |
gaataatacaaaagggaataaacaatcttcaaatcagcaaaagcatcaataaaaatatgataaacatagaagtaccctgcagtaatacttgaattttgtg |
50224481 |
T |
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| Q |
117 |
aaataaaggttgtctgcgatgactataacagcatgctgccgcttcattgagaaccactgcagtacaaacatgatgtaaaaacatgatgtaaattaacccc |
216 |
Q |
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| T |
50224480 |
aaataaaggttgtctgcgatgactataacagcatgctgccgcttcattgagaaccactgcagtacaaacatgatgtaaa-------------ttaacccc |
50224394 |
T |
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| Q |
217 |
acacgagaaatgtttaaaattgattcctgagtttctacatttgtattgcaaaaacgatgatgtgagccaaatcttgattgcaacgagtggttgcacaatg |
316 |
Q |
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| T |
50224393 |
acacgagaaatgtttcaaattgattcctgagtttctacattcgtattgcaaaaacgatgatgtgagccaaatcttgattgcaacgagtggttgcacaatg |
50224294 |
T |
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| Q |
317 |
tagaggggagataaatgatcagaagatgatattataacaatcactatttaaaattcactgtaagattaatattctaataattattttcccatatgcattt |
416 |
Q |
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| T |
50224293 |
tagaggggagataaatgatcagaagatgctattataacaatcactatttaaaattcactgtaagattaatattctaataattattttcccatatgcattt |
50224194 |
T |
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| Q |
417 |
gtggtcaagtttgtgaagactttctcttagttaagatcacactaa |
461 |
Q |
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| T |
50224193 |
gtggtcaagtttgtcaagactttttctcagttaagatcacactaa |
50224149 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 52958741 - 52958701
Alignment:
| Q |
138 |
actataacagcatgctgccgcttcattgagaaccactgcag |
178 |
Q |
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| T |
52958741 |
actataacagcatgctgccgcttcatagaaaaccactgcag |
52958701 |
T |
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