View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16267_high_6 (Length: 419)
Name: NF16267_high_6
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 402
Target Start/End: Complemental strand, 50224021 - 50223649
Alignment:
| Q |
30 |
cagtggatgattggaaaggtggaagaagaagaatttagtcagaatttccatctaacaaatatggaacaaggaaaaggatttaaaattttcatgaactaat |
129 |
Q |
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| T |
50224021 |
cagtggatgattggaaaggtggaagaagaagaatttagtcagaatttccatctaacaaatatggaacaaggaaaaggatttaaaattttcatgaactaat |
50223922 |
T |
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| Q |
130 |
tagcattagttcttcgaatgtaaaataatgtcttaccattcaatgaagctaacatttgtaaacactaaatagttgtacacgaattcaaagtgacgtatag |
229 |
Q |
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| T |
50223921 |
tagcattagttcttcgaatgtaaaataatgtcttaccattcaatgaagctaacatttgtaaacactaaatagttgtacacgaattcaaagtgacgtatag |
50223822 |
T |
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| Q |
230 |
gtatacaactgaaacaaaatataagatgtcattgactagatcaaatccctaaaccaaccatgactttacactaaagagaaatctgctnnnnnnnttacct |
329 |
Q |
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| T |
50223821 |
gtatacaactgaaacaaaatataagatgtcattgactagatcaaatccctaaaccaatcatgactttacactaaagagaaatctgctaaaaaaattacct |
50223722 |
T |
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| Q |
330 |
ttcagatagcaagacaaaatgttggttatcagggtctaaaagtgcatttgccagaagccttctttctgcttcc |
402 |
Q |
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| T |
50223721 |
ttcagatagcaagacaaaatgttggttatcagggtctaaaagtgcatttgccagaagccttctttctgcttcc |
50223649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 1651170 - 1651222
Alignment:
| Q |
346 |
aaatgttggttatcagggtctaaaagtgcatttgccagaagccttctttctgc |
398 |
Q |
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| T |
1651170 |
aaatgttggttatcagggtctaaaagtgcatttgccaaaagtctcctttctgc |
1651222 |
T |
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