View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16267_high_8 (Length: 412)
Name: NF16267_high_8
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 9459656 - 9459273
Alignment:
| Q |
17 |
agcaagtgattgagtgcaagaggatgcttgaagaatgtttgagggggtcacacatacaatacaggtagggtaggatcaaattcttcttgttccatttcta |
116 |
Q |
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| T |
9459656 |
agcaagtgattgagtgcaagaggatgcttgaagaatgtttgagggggtcacacatacaatacaggtagggtaggatcaaattcttcttgttccatttcaa |
9459557 |
T |
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| Q |
117 |
aaacaagcttattttcaaaatagataatgataattgttaaattaaagtattcaaaataaatgttctctttatttgaaacatatgaatatatagttttatt |
216 |
Q |
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| T |
9459556 |
aaacaagcttattttcaaaatagataatgataattgttaaattaaagtattcaaaataaatgttctctttatttgaaacatatgaatatatagttttatt |
9459457 |
T |
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| Q |
217 |
tattaatttatataatcactgattttatacttctatnnnnnnnnntgccgtgcctgccctacaaaaaatataaatggaaattgcagaacttatttgactt |
316 |
Q |
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| T |
9459456 |
tattaatttatataatcactgattttatacttctat--aaaaaaatgccgtgcctgccctacaaaaaatataaatggaaattgcagaacttatttgactt |
9459359 |
T |
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| Q |
317 |
tcttttcactaaagaacgtggttgacttagattctgaactattggagtctgttcaagcatcaatagtcacttcttttgactttctt |
402 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9459358 |
tcttttcactaaagaacgtggttgacttagattctaaactattggagtctgttcaagcatcaatagtcacttcttttgactttctt |
9459273 |
T |
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