View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16267_low_11 (Length: 397)
Name: NF16267_low_11
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 39559523 - 39559158
Alignment:
| Q |
16 |
atctcttcttttgcatgcatttcctcctagaaccaatgagtaaaaataaactcttacttcactcaaatgcaacatgttcttagaagtttttgacaataaa |
115 |
Q |
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| T |
39559523 |
atctcttcttttgcatgcatttcctcctagaaccaatgagtaaaaataaactcttacttcactcaaatgcaacatgttcttagaagtttttgacaataaa |
39559424 |
T |
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| Q |
116 |
ggacaaagcattgaagatgctctaagttcgtcaatatgttcaccaaacacaatgggtgtaaagttttacctcactcaaattgaattattgggattaatat |
215 |
Q |
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| T |
39559423 |
ggacaaagcattgaagatgctctaagtttgtcaatatgctcaccaaacacaatgggtgtaaagttttacctcactcaaattgaattattgggattaatat |
39559324 |
T |
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| Q |
216 |
gattcccagatcctgtatctaaagattctataccaaatcattacaaacaagaaaaccctaactgacacaagaacttaattgtgcagacaataatttgccc |
315 |
Q |
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| T |
39559323 |
gattcccagatcctgtatctaaagattctataccaaatcattacaaacaagaaaaccctaactgacacaagaacttaattgtgcagacaataatttgccc |
39559224 |
T |
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| Q |
316 |
tgcatgcatggcttgtttctgtatattcgtattttatggtctatagaaaacattatatactgtgtg |
381 |
Q |
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| T |
39559223 |
tgcatgcatggcttgtttctgtatattcgtattttatggtctatagaaaacattatatactgtgtg |
39559158 |
T |
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