View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16267_low_16 (Length: 253)
Name: NF16267_low_16
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 1787696 - 1787550
Alignment:
| Q |
92 |
taaatgtgacatttagtacgaggttgagggtgtgagagatttgagacatgatttcttaccattttactaagtgacattggtcttttcagtttcaaattta |
191 |
Q |
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| T |
1787696 |
taaatgtaacatttagtacgaggttgagggtgtgagagatttgagacatgatttcttaccattttactaagtgacattggtcttttcagtttcaaattta |
1787597 |
T |
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| Q |
192 |
tgaccctctttccagagagaatttgtagaagtaccatgccaaaactg |
238 |
Q |
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| T |
1787596 |
tgaccctctttccagagagaatttgtagaagtaccatgccaaaactg |
1787550 |
T |
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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1787843 - 1787772
Alignment:
| Q |
1 |
cgaagatcatattatttactaaagtacctttgttaatatagtagttaatgaaatagttagatgcgttaaaat |
72 |
Q |
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| T |
1787843 |
cgaagatcatattatttactaaagtacctttgtcaatatagtagttaatgaaatagttagatgcgttaaaat |
1787772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 5399354 - 5399399
Alignment:
| Q |
14 |
atttactaaagtacctttgttaatatagtagttaatgaaatagtta |
59 |
Q |
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| T |
5399354 |
atttactaaagtacccttattaatatagtagttggtgaaatagtta |
5399399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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