View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16267_low_18 (Length: 240)
Name: NF16267_low_18
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_low_18 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1788054 - 1788293
Alignment:
| Q |
1 |
ttgtaatttagaaattaatacactaaatgtgccataaaaagaaattagtacattaagtgatttatgaaggtgtgcataatctttaacgg----tatttaa |
96 |
Q |
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| T |
1788054 |
ttgtaatttagaaattaatacactaaatgtaccataaaaaaaaattagtacattaagtgatttatgaaggtgtgcataatctttaacggtatatatttaa |
1788153 |
T |
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| Q |
97 |
tagtgttttaaaatccggactgaatcggtcggtcggtacggtactatttaataagagatagaggaagtactcttctttcattattcnnnnnnnaatcttt |
196 |
Q |
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| T |
1788154 |
cagtgttttaaaattcggactg----gaccggtcggtatggtaatatttaataagagatagaggaagtactcttctttcattattctttttttaatcttt |
1788249 |
T |
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| Q |
197 |
ggtcagaagtttgaccctttgtgccaattttatgtgacttcatt |
240 |
Q |
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| T |
1788250 |
ggtcagaagtttgaccctttgtgccaattttatgtgacttcatt |
1788293 |
T |
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