View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16267_low_20 (Length: 223)

Name: NF16267_low_20
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16267_low_20
NF16267_low_20
[»] chr6 (7 HSPs)
chr6 (14-223)||(1880781-1880990)
chr6 (14-223)||(1888077-1888290)
chr6 (157-223)||(1892925-1892991)
chr6 (157-223)||(1898254-1898320)
chr6 (154-223)||(1913629-1913698)
chr6 (158-219)||(1903558-1903619)
chr6 (158-219)||(1907791-1907852)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 1880990 - 1880781
Alignment:
Q  14 acatagacagctccctttaagcgcaatgaccatgcataaactatactgcttattaattttccaaaaatcccctagaaatataaatgtgtcaaattaagag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1880990 acatagacagctccctttaagcgcaatgaccatgcataaactatactgcttattaattttccaaaaatcccctagaaatataaatgtgtcaaattaagag 1880891  T
Q  114 ctgtaaatttatttggtcaagttcagcaatagtactttcaagtgtatcttacagaagaaactatagagatgagtgagagatttagccctattttccaagc 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1880890 ctgtaaatttatttggtcaagtacagcaatagtactttcaagtgtatcttacagaagaaactatagagatgagtgagagatttagtcctattttccaagc 1880791  T
Q  214 acttgcattt 223  Q
    ||||||||||    
T  1880790 acttgcattt 1880781  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 1888290 - 1888077
Alignment:
Q  14 acatagacagctccctttaagcgcaatgaccatgcataaactatactgcttattaattttccaaaaatcccctagaaatat-----aaatgtgtcaaatt 108  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| | | |||||||||||| ||||| ||||| ||| ||     |||||| |  || |    
T  1888290 acatagacagctccctttaaacgcattgaccatgcataaactatattccctattaattttcccaaaattccctataaaaattaaataaatgtatataaat 1888191  T
Q  109 aagagctgtaaatttatttggtcaagttcagcaatagtactttcaagtgtatcttacagaagaaactatagagatgagtgagagatttagccctattttc 208  Q
    ||||| |||||| |  ||||    |||  ||||||| |  ||| || |||||||||| |||||||| || |||||||||||||||||||| |||||||||    
T  1888190 aagaggtgtaaaatcttttgtcgtagtgaagcaata-tggtttgaaatgtatcttacggaagaaacaatggagatgagtgagagatttagtcctattttc 1888092  T
Q  209 caagcacttgcattt 223  Q
    |||||||||||||||    
T  1888091 caagcacttgcattt 1888077  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 1892991 - 1892925
Alignment:
Q  157 gtatcttacagaagaaactatagagatgagtgagagatttagccctattttccaagcacttgcattt 223  Q
    |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||    
T  1892991 gtatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcattt 1892925  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 1898320 - 1898254
Alignment:
Q  157 gtatcttacagaagaaactatagagatgagtgagagatttagccctattttccaagcacttgcattt 223  Q
    |||||||||||||||||| || ||||| ||||||||||| || ||||||||||||||||||||||||    
T  1898320 gtatcttacagaagaaacaatggagataagtgagagattcagtcctattttccaagcacttgcattt 1898254  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 1913698 - 1913629
Alignment:
Q  154 agtgtatcttacagaagaaactatagagatgagtgagagatttagccctattttccaagcacttgcattt 223  Q
    ||||||||||||||||||||| || ||||| |||||||||||||| |||||| |||||||||||| ||||    
T  1913698 agtgtatcttacagaagaaacaatggagataagtgagagatttagtcctattatccaagcacttgaattt 1913629  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 1903619 - 1903558
Alignment:
Q  158 tatcttacagaagaaactatagagatgagtgagagatttagccctattttccaagcacttgc 219  Q
    |||||||||||| |||| |  |||| |||||||||||| |  ||||||||||||||||||||    
T  1903619 tatcttacagaacaaacaacggagacgagtgagagattcaatcctattttccaagcacttgc 1903558  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 1907852 - 1907791
Alignment:
Q  158 tatcttacagaagaaactatagagatgagtgagagatttagccctattttccaagcacttgc 219  Q
    |||||||||||| |||| |  |||| |||||||||||| |  ||||||||||||||||||||    
T  1907852 tatcttacagaacaaacaacggagacgagtgagagattcaatcctattttccaagcacttgc 1907791  T

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