View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16267_low_23 (Length: 208)
Name: NF16267_low_23
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 17454427 - 17454614
Alignment:
| Q |
6 |
tatttatttaagaatgattgtaatttatactatatgtaactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaa |
105 |
Q |
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| T |
17454427 |
tatttatttaagaatgattgtaatttatactatatgtaactattgcaaattacctgtccatataaagttgatccaactccccctgaatgttgatgagcaa |
17454526 |
T |
|
| Q |
106 |
cagcatagatcacatagccaccggtttgcagtgggagacttgtcctcttcacatgaatacaaccatttccctcctcatggtctgtgct |
193 |
Q |
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| T |
17454527 |
cagcatagatcacatagccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgct |
17454614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 17433351 - 17433535
Alignment:
| Q |
10 |
tatttaagaatgattgt-aatttatactatatgtaactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacag |
108 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17433351 |
tatttaagaatgatttttaatttatactatatgtaactattgcaaattacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacag |
17433450 |
T |
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| Q |
109 |
catagatcacatagccaccggtttgcagtgggagacttgtcctcttcacatgaatacaaccatttccctcctcatggtctgtgct |
193 |
Q |
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||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||| |
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| T |
17433451 |
catagatcacatatccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgct |
17433535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 38253236 - 38253372
Alignment:
| Q |
44 |
actattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtgggaga |
143 |
Q |
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| T |
38253236 |
actattgcaaattacctgtccaaatagggttgatccaattccacctgaatgctgatgagcaacaccatagatcacatagccaccggtttgtagtgggaga |
38253335 |
T |
|
| Q |
144 |
cttgtcctcttcacatgaatacaaccatttccctcct |
180 |
Q |
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|||||||| || ||||||| ||| ||||||||||||| |
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| T |
38253336 |
cttgtcctttttacatgaacacacccatttccctcct |
38253372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 38213986 - 38214120
Alignment:
| Q |
40 |
tgtaactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtgg |
139 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
38213986 |
tgtaagtattgcaaattacctgtccatatagagttgatccaattccgcctgaatgctgatgagcaacagcatagacaacatagccaccagtttgtagtgg |
38214085 |
T |
|
| Q |
140 |
gagacttgtcctcttcacatgaatacaaccatttc |
174 |
Q |
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| T |
38214086 |
gagacttgtcctcatcacatgaacacaaccatttc |
38214120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 38226372 - 38226517
Alignment:
| Q |
47 |
attgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtgggagactt |
146 |
Q |
| |
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|||| |||||||||| || |||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||| |
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| T |
38226372 |
attgtaaattacctgcccgtatagagttgatccaattccacctgaatgctgatgagcaacaccatagatcacatagccaccagtttgtagtgggagactt |
38226471 |
T |
|
| Q |
147 |
gtcctcttcacatgaatacaaccatttccctcctcatggtctgtgc |
192 |
Q |
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||||||||||||| || ||||||||||| || | ||||||||||| |
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| T |
38226472 |
gtcctcttcacatcaacacaaccatttctttctttatggtctgtgc |
38226517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 38242881 - 38243032
Alignment:
| Q |
42 |
taactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtggga |
141 |
Q |
| |
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||||||||| ||||||||||||||||||| || ||||||| |||||||||||| ||||| |||||| ||||||||||||| ||||| ||||| | ||||| |
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| T |
38242881 |
taactattggaaattacctgtccatatagggtggatccaattccacctgaatgctgatgtgcaacaccatagatcacatatccaccagtttgaaatggga |
38242980 |
T |
|
| Q |
142 |
gacttgtcctcttcacatgaatacaaccatttccctcctcatggtctgtgct |
193 |
Q |
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||||||||||||||||||||| ||| |||||| ||||| |||||||||||| |
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| T |
38242981 |
gacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgct |
38243032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 55 - 193
Target Start/End: Original strand, 38237919 - 38238057
Alignment:
| Q |
55 |
ttacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtgggagacttgtcctctt |
154 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||| || ||||||||| ||||||||| ||||| | |||||||||||||||||| |
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| T |
38237919 |
ttacctgtccatatagagttgatccaattccgcctgaatgttgatgagcagcaccatagatcatatagccaccagtttgaaatgggagacttgtcctctt |
38238018 |
T |
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| Q |
155 |
cacatgaatacaaccatttccctcctcatggtctgtgct |
193 |
Q |
| |
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|||||||| ||| ||||||||||| |||||||||||| |
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| T |
38238019 |
cacatgaacacaggaatttccctccttatggtctgtgct |
38238057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 191
Target Start/End: Original strand, 38220022 - 38220175
Alignment:
| Q |
38 |
tatgtaactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagt |
137 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||||| | |||||| ||||||||||| |||||| ||||||||||||| ||||| ||||| | | |
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| T |
38220022 |
tatgtaactattggaaattacctgtccatatagggtggatccgattccacccgaatgttgatgtgcaacaccatagatcacataaccaccagtttgaaat |
38220121 |
T |
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| Q |
138 |
gggagacttgtcctcttcacatgaatacaaccatttccctcctcatggtctgtg |
191 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| |||| ||||| |||| |
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|
| T |
38220122 |
gggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtg |
38220175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 38248174 - 38248232
Alignment:
| Q |
135 |
agtgggagacttgtcctcttcacatgaatacaaccatttccctcctcatggtctgtgct |
193 |
Q |
| |
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||||||||||||||||| |||||||||| ||| ||||||||||||| || |||||||| |
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| T |
38248174 |
agtgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgct |
38248232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 11473615 - 11473513
Alignment:
| Q |
57 |
acctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtgggagacttgtcctcttca |
156 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||||| |||| ||||||| | ||| ||||| |||||| ||||| ||||| ||||| | |
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| T |
11473615 |
acctttccatatagagttgatccaattgcacctgaatgttgatgaccaactccatagatgagataaccaccattttgcattgggaagcttgttctcttga |
11473516 |
T |
|
| Q |
157 |
cat |
159 |
Q |
| |
|
||| |
|
|
| T |
11473515 |
cat |
11473513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 11485886 - 11485802
Alignment:
| Q |
57 |
acctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtggga |
141 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||| |||||| |||| ||||||| ||||| ||||| |||||| ||||| |
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|
| T |
11485886 |
acctttccatatagagttgatccaattgcacctgaatgctgatgaccaactccatagatgacataaccaccattttgcattggga |
11485802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 11479792 - 11479708
Alignment:
| Q |
57 |
acctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtggga |
141 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||| |||| |||| || ||||| || ||| |||||| ||||| |
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|
| T |
11479792 |
acctgtccatatagagttgatccaattgcacctgaatgctgatggccaactccatatatgacataaccgccgttttgcattggga |
11479708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 21547405 - 21547341
Alignment:
| Q |
57 |
acctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacata |
121 |
Q |
| |
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||||||||||||||||||||||||| | |||||| ||| ||||| |||| ||||||| ||||| |
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| T |
21547405 |
acctgtccatatagagttgatccaattgcacctgtgtgtagatgaccaactccatagatgacata |
21547341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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