View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16267_low_3 (Length: 462)
Name: NF16267_low_3
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 40576103 - 40576000
Alignment:
| Q |
17 |
caccaaggaatgagatgatacagcatttagaggaagacttttcaatattcgtgaaaaagttgatataagaagggtattgtcgatcaacctagctcatgct |
116 |
Q |
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| T |
40576103 |
caccaaggaatgagatgatacagcatttagaggaagacttttcaatattcgtgaaaaagttgatataagaagggtattgccgatcaacctagctcatgct |
40576004 |
T |
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| Q |
117 |
tcag |
120 |
Q |
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|||| |
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| T |
40576003 |
tcag |
40576000 |
T |
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Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 40576005 - 40575923
Alignment:
| Q |
179 |
cttcagctcaagtgttgatatacaccagattggcttcaataattcaattccaaaattggcaaaaagcagaaacaaagtaccaa |
261 |
Q |
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| T |
40576005 |
cttcagctcaagtgttgatatacaccagattgacttcaataattcaattccaaaattggcaaaaagcagaaacaaagtaccaa |
40575923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 19860362 - 19860309
Alignment:
| Q |
184 |
gctcaagtgttgatatacaccagattggcttcaataattcaattccaaaattgg |
237 |
Q |
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| T |
19860362 |
gctctagtgttgatatacaccagattggcttcaataattcaatttcaaaattgg |
19860309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 19852339 - 19852260
Alignment:
| Q |
285 |
tctaaaaactctaattgaatgacaatattacacggtcaacccacattgtttataaatatattatactacatgattttctt |
364 |
Q |
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| T |
19852339 |
tctaaaaactctatttgagtgacaataataagaagttaacacacattgtttataaatataatatactacataattttctt |
19852260 |
T |
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