View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16267_low_8 (Length: 413)
Name: NF16267_low_8
Description: NF16267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16267_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 47401630 - 47401279
Alignment:
| Q |
19 |
gaagaggtgaagatgattttgtctgacatgttccaannnnnnnnnaggagaggcctgcattggcctaaaattaaatagcctaaaattacaaatgaaaaag |
118 |
Q |
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| T |
47401630 |
gaagaggtgaagatgattttgtctgacatgttccaatttttttt-aggagaggcctgcattggcctaaaattaaatagcctaaaattacaaatgaaaaag |
47401532 |
T |
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| Q |
119 |
tgttatagtgcaaattaaaatatttcttatggtaggagaattatttcaaacgataaatgaatgaaaaattaggttcgttggaaaatttctcaagaattat |
218 |
Q |
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| T |
47401531 |
tgttatagtgcaaattaaaatatttcttatggtaggagaattatttcaaacgataaatgaatgaaaaattaggttcgttggaaaatttctcaagaattat |
47401432 |
T |
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| Q |
219 |
gttatgcttaaatacgttgcattaaacagtaattctatttaatttgtgttcctttcg-nnnnnnnnnnnnnnnttgtgttatgaatggtggtataattat |
317 |
Q |
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| T |
47401431 |
gttatgcttaaatacgttgcattaaacagtaattctatttaatttgtgttcctttcgaaaaagaaaaaaaaaattgtgttatgaatggtggtataattat |
47401332 |
T |
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| Q |
318 |
ttttaacgttaaacattatgaaaaaaatacttgctctcaaaatatctcagaatt |
371 |
Q |
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| T |
47401331 |
ttttaacgttaaacattatg-aaaaaatacttgctctcaaaatatctcagaatt |
47401279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 47401026 - 47400946
Alignment:
| Q |
94 |
tagcctaaaattacaaatgaaaaagtgttatagtgcaaattaaaatatttcttatggtaggagaattatttcaaacgataa |
174 |
Q |
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| T |
47401026 |
tagcctaaaattacaaacgaaaaagtgttatagtgcaactcaaaatattttttgcagtgggaaaattatttcaaaagataa |
47400946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 47400827 - 47400787
Alignment:
| Q |
302 |
atggtggtataattatttttaacgttaaacattatgaaaaa |
342 |
Q |
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| T |
47400827 |
atggtggtataattatttttaacgttaaccattatgaaaaa |
47400787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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