View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16268_low_1 (Length: 651)

Name: NF16268_low_1
Description: NF16268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16268_low_1
NF16268_low_1
[»] chr5 (1 HSPs)
chr5 (13-651)||(7908252-7908890)


Alignment Details
Target: chr5 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 13 - 651
Target Start/End: Complemental strand, 7908890 - 7908252
Alignment:
Q  13 atcatctgtacttggttaggcatcgtcagatgcttagtatccgttcagaattcagatatccagcaaacataataccaaatgtcacaataatattcaagca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908890 atcatctgtacttggttaggcatcgtcagatgcttagtatccgttcagaattcagatatccagcaaacataataccaaatgtcacaataatattcaagca 7908791  T
Q  113 caaatataaaaccctatttagtgattattcaaatttacccgaaagtatgtgtgcagggcggtattgaatgagaatgccttattgtcagtatttttaactt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7908790 caaatataaaaccctatttagtgattattcaaatttacccgaaagtatgtgtgcagagcggtattgaatgagaatgccttattgtcagtatttttaactt 7908691  T
Q  213 ttaactcagtcgaaagacttttagcatttagtgtgacctacaaaaatgaaagcatgaaatcacatcatgatttggtaacagaatcgtaatctagtagtat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908690 ttaactcagtcgaaagacttttagcatttagtgtgacctacaaaaatgaaagcatgaaatcacatcatgatttggtaacagaatcgtaatctagtagtat 7908591  T
Q  313 tgaaaatgtgagttgtgcttgaagaaaacaagtccttgacaaccttatataaagcatgaaagctgaaatcccacatagcacgactatacgtatcatcctt 412  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908590 tgaaaaagtgagttgtgcttgaagaaaacaagtccttgacaaccttatataaagcatgaaagctgaaatcccacatagcacgactatacgtatcatcctt 7908491  T
Q  413 cagttccagagttacaacaggatttccctcgacattctcagaatcaccaacagtccaatccaaattccttgcaaacccatgctgtcgaaaactcaaccaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908490 cagttccagagttacaacaggatttccctcgacattctcagaatcaccaacagtccaatccaaattccttgcaaacccatgctgtcgaaaactcaaccaa 7908391  T
Q  513 acaaacattttaacaagtcatcacagtaaattactcttaattttcagtcaaagagaagcaacttttatcaaccaaatattaagcacaaaagttgcaatca 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908390 acaaacattttaacaagtcatcacagtaaattactcttaattttcagtcaaagagaagcaacttttatcaaccaaatattaagcacaaaagttgcaatca 7908291  T
Q  613 ctattttcactaagctacataaaatagcatgtatatagc 651  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7908290 ctattttcactaagctacataaaatagcatgtatatagc 7908252  T

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