View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16268_low_2 (Length: 606)
Name: NF16268_low_2
Description: NF16268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16268_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 27252179 - 27251590
Alignment:
| Q |
1 |
aggacgatttcgagtaaatggctatgagtttttgtctctccttttaattgggtgtatgttgagacatgattaagtacaaactcatagcaaaagattttat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27252179 |
aggacaatttcgagtaaatggctatgagtttttgtctctccttttaattgggtgtatgttgagacatgattaagtacaaactcatagcaaaagattttat |
27252080 |
T |
|
| Q |
101 |
tgaagtcgtaaaggtgcatgtaatnnnnnnnnnnnnnnnnnnnnnnntagtctccaagactataaaatattacacatttttgacaaattagtcttacaga |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27252079 |
tgaagtcgtaaaggtgcatgtaataaaacaaaacaaaaaatcaaaaatagtctccaagactataaaatattacacatttttgaataattagtcttacaga |
27251980 |
T |
|
| Q |
201 |
ataatattcatcctccgtcaacaccatcattaactgctagtgttgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251979 |
ataatattcatcctccgtcaacaccatcattaactgctagtgctgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagta |
27251880 |
T |
|
| Q |
301 |
gcctttgacgaacaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251879 |
gcctttgacgaacaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagc |
27251780 |
T |
|
| Q |
401 |
gcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251779 |
gcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggt |
27251680 |
T |
|
| Q |
501 |
ttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaactatacatagcaagaatacaactt |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27251679 |
ttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaactatacatagc-agaatacaactt |
27251590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 148 - 579
Target Start/End: Complemental strand, 21196283 - 21195852
Alignment:
| Q |
148 |
tagtctccaagactataaaatattacacatttttgacaaattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgttgct |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21196283 |
tagtctccaagactataaaatattacacatttttgattaattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgctgct |
21196184 |
T |
|
| Q |
248 |
gtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcac |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21196183 |
gtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcttcggattcaccctcac |
21196084 |
T |
|
| Q |
348 |
cagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtctt |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21196083 |
cagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtctt |
21195984 |
T |
|
| Q |
448 |
caatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctca |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195983 |
caatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctca |
21195884 |
T |
|
| Q |
548 |
gattgtccaccagacaaaaactatacatagca |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21195883 |
gattgtccaccagacaaaaactatacatagca |
21195852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 293 - 570
Target Start/End: Complemental strand, 27268721 - 27268444
Alignment:
| Q |
293 |
taagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcgga |
392 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |
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|
| T |
27268721 |
taagagtatcctttgacaaacaattccttcttggcttcctcagattcaccctcaccagtgtactttccaagttgagcaagtgagttggacttagcacgga |
27268622 |
T |
|
| Q |
393 |
aaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtg |
492 |
Q |
| |
|
|||| || |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| |
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|
| T |
27268621 |
aaaggagtgcttcttgtgctgcctgaacgttctctatgcggcctccccatgtcttcaatgcggtgttctggagagctcttgcatatgagaatgacacgtg |
27268522 |
T |
|
| Q |
493 |
ccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaacta |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27268521 |
ccatgggtttggagattggttcatggcattcaagttgagcgttgcttcaacctcagattgtccaccagacaaaaacta |
27268444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 21196428 - 21196314
Alignment:
| Q |
9 |
ttcgagtaaatggctatgagtttttgtctctccttttaattgggtgtatgttgagacatgattaagtacaaactcatagcaaaagattttattgaagtcg |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21196428 |
ttcgagtaaatggctatgagttttggtctctccttttaattgggtttatgctgagacatgattaagtacaaactcatagcaaaagattttattgaagtcg |
21196329 |
T |
|
| Q |
109 |
taaaggtgcatgtaat |
124 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
21196328 |
taaa-gtgcatgtaat |
21196314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 27268834 - 27268795
Alignment:
| Q |
148 |
tagtctccaagactataaaatattacacatttttgacaaa |
187 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
27268834 |
tagtctccaagactataaaacattacacaattttgacaaa |
27268795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 467 - 569
Target Start/End: Original strand, 49363995 - 49364097
Alignment:
| Q |
467 |
gctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaa |
566 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||| ||| ||||||||| ||||| | || || ||||||||||| || ||||||||||| ||||||| |
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|
| T |
49363995 |
gctcgtgcgtatgagaaagacacatgccatgggttgggactttggttcatagcattaagatttagagttgcttcaacttctgattgtccacctgacaaaa |
49364094 |
T |
|
| Q |
567 |
act |
569 |
Q |
| |
|
||| |
|
|
| T |
49364095 |
act |
49364097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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