View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16268_low_3 (Length: 311)
Name: NF16268_low_3
Description: NF16268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16268_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 41540957 - 41540677
Alignment:
| Q |
19 |
aatgtttaacacaagacaacaatctgttattactcacaacacaatctcttgaaattgtagttacaatgacaaatctaaatctaaatgaaatggattaagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41540957 |
aatgtttaacacaagacaacaatctgttattactcacaacacaatctcttgaaattgtagttacaatgacaaatctaaatctaaatgaaatggattaagg |
41540858 |
T |
|
| Q |
119 |
ctacactaagttattcatcagcaaactaaaacaacttgttcgccagcacttttgcctgtgaacattgcttctaatgcagctggtccactctcaatgccta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41540857 |
ctacactaagttattcatcagcaaactaaaacaacttgttcgtcagcacttttgcctgtgaacattgcttctaatgcagctggtccactctcaatgccta |
41540758 |
T |
|
| Q |
219 |
tagctatatcttcaacatatgctatcttcccttccctaacataaggcaaaattgtgtccaaaaacttgggatataaatgat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41540757 |
tagctatatcttcaacatatgctatcttcccttccctaacataaggcaaaattgtgtccaaaaacttgggatataaatgat |
41540677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University