View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16269_low_1 (Length: 394)
Name: NF16269_low_1
Description: NF16269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16269_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 44852294 - 44851924
Alignment:
| Q |
17 |
atttctaatctcaaaatccgaatcatccaatcaagatgaaaaagtgttgagctgaaataatggtttggttgcgtaaattaacactttatatgcaatgaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44852294 |
atttctaatctcaaaatccgaatcatccaatcaagatgaaaaagtgttgagctgaaataatggtttggttgcgtaaattaacactttatatgcaatgaaa |
44852195 |
T |
|
| Q |
117 |
ctcatttaacagtttcattttaaaatacatttcgataaagtatatcactcaaggagcgtacctcctttggatatcctacacactgcaagctaccatctac |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44852194 |
ctcatttaaaagtttcattttaaaatacatttcgataaagtatatcactcaaggagcgtacctcctttggatatcctacacactgcaagctaccatctac |
44852095 |
T |
|
| Q |
217 |
aaaaattcctaaccgatcacataaagcatctgcctcttccatagaatgtgctgaaaagcataaaaccaagatttatgaatcaaatataacacaggctaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44852094 |
aaaaattcctaaccgatcacataaagcatctgcctcttccatagaatgtgctaaaaagcataaaaccaagatttatgaatcaaatataacacaggctaaa |
44851995 |
T |
|
| Q |
317 |
gcataaattagaagcaaatgtagtgctacaaaatccatg--agagtgtgtggggttactggtcagaataat |
385 |
Q |
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| T |
44851994 |
gcataaattagaagcaaatgtagtgctacaaaatccatgaaagagtgtgtggggttactggtcagaataat |
44851924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 44901159 - 44900982
Alignment:
| Q |
119 |
catttaacagtttcattttaaaatacatttcgataaagtatatcactcaaggagcgtacctcctttggatatcctacacactgcaagctaccatctacaa |
218 |
Q |
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||||||||| |||||| || ||||||||| ||||||| ||| |||| || | ||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
44901159 |
catttaacaatttcatgttggaatacattttgataaagaataacactttagcaatgtacctcctttggatttcctacacactgcaagctaccatttacaa |
44901060 |
T |
|
| Q |
219 |
aaattcctaaccgatcacataaagcatctgcctcttccatagaatgtgctgaaaagcataaaaccaagatttatgaatc |
297 |
Q |
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| T |
44901059 |
aaattcctaatcgatcacataaagcctctgcctcttccatagaatgtgctgaaaa-cataaaaccaagatttatgaatc |
44900982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 127 - 290
Target Start/End: Complemental strand, 44840757 - 44840595
Alignment:
| Q |
127 |
agtttcattttaaaatacatttcgataaagtatatcactcaaggagcgtacctcctttggatatcctacacactgcaagctaccatctacaaaaattcct |
226 |
Q |
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||||||||||| ||||||| ||| |||||| ||| |||| || | ||||||||||||||| ||||| || ||||||||||||| |||||| |||||| |
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| T |
44840757 |
agtttcattttgaaatacagttccataaagcataacactagagaaatgtacctcctttggatttcctatgcattgcaagctaccatttacaaatattcct |
44840658 |
T |
|
| Q |
227 |
aaccgatcacataaagcatctgcctcttccatagaatgtgctgaaaagcataaaaccaagattt |
290 |
Q |
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| T |
44840657 |
aatcgatcacataaggcatctgcctcttccatagaatgtgctg-aaagcataaaaccaagattt |
44840595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 119 - 282
Target Start/End: Complemental strand, 44866574 - 44866412
Alignment:
| Q |
119 |
catttaacagtttcattttaaaatacatttcgataaagtatatcactcaaggagcgtacctcctttggatatcctacacactgcaagctaccatctacaa |
218 |
Q |
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||||||||||||||||||| |||||||||| || |||| |||||| | | | ||||||||||||||| |||||| |||||||||||||| || |||| |
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| T |
44866574 |
catttaacagtttcattttgaaatacattttgagaaagcatatcagtttaacaatgtacctcctttggatttcctacgcactgcaagctaccgtcgacaa |
44866475 |
T |
|
| Q |
219 |
aaattcctaaccgatcacataaagcatctgcctcttccatagaatgtgctgaaaagcataaaac |
282 |
Q |
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| T |
44866474 |
aaattcctaatcgatcacataaggcttctgcctcttccatagaatgtgctgaaaa-cataaaac |
44866412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 120 - 282
Target Start/End: Complemental strand, 44884396 - 44884235
Alignment:
| Q |
120 |
atttaacagtttcattttaaaatacatttcgataaagtatatcactcaaggagcgtacctcctttggatatcctacacactgcaagctaccatctacaaa |
219 |
Q |
| |
|
|||||| ||||||||||| ||||| |||| ||||||| |||||||| || | ||||||||||||||| ||||||||||||||| || || ||||| || |
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| T |
44884396 |
atttaatagtttcattttgaaatatattttgataaagcatatcacttgagcaatgtacctcctttggatttcctacacactgcaatcttccgtctacgaa |
44884297 |
T |
|
| Q |
220 |
aattcctaaccgatcacataaagcatctgcctcttccatagaatgtgctgaaaagcataaaac |
282 |
Q |
| |
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||||||||| |||||||| || || |||||||||||||| |||||||||| |||||||||||| |
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| T |
44884296 |
aattcctaatcgatcacacaaggcctctgcctcttccattgaatgtgctg-aaagcataaaac |
44884235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 44884199 - 44884126
Alignment:
| Q |
312 |
ctaaagcataaattagaagcaaa-tgtagtgctacaaaatccatg--agagtgtgtggggttactggtcagaat |
382 |
Q |
| |
|
|||||| ||||| |||||||||| | ||||||||||||||||||| |||||| ||| | |||||||||||||| |
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| T |
44884199 |
ctaaagtataaactagaagcaaaatttagtgctacaaaatccatgaaagagtgagtgtgattactggtcagaat |
44884126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 12924152 - 12924251
Alignment:
| Q |
175 |
tacctcctttggatatcctacacactgcaagctaccatctacaaaaattcctaaccgatcacataaagcatctgcctcttccatagaatgtgctgaaaag |
274 |
Q |
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|||||| ||||||| ||||| |||||| |||||||| |||||||| |||||||| ||||| |||| | |||||||||||||| ||||||||||||||| |
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| T |
12924152 |
tacctcttttggatttcctatacactgaaagctaccgtctacaaatattcctaatcgatcgcataggacttctgcctcttccatggaatgtgctgaaaag |
12924251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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