View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16269_low_2 (Length: 341)
Name: NF16269_low_2
Description: NF16269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16269_low_2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 52952232 - 52952417
Alignment:
| Q |
1 |
ttagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatcaatcgaaatggtacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52952232 |
ttagatcttgatagttttggctctttggtttcttaggttgcccaaacacacaagacaatatagcgtcaaaataatggagtatcaatcgaaatggtacaag |
52952331 |
T |
|
| Q |
101 |
aggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt |
186 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52952332 |
aggaagagagtgaataatttatcgtcacatcattaaaatcacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt |
52952417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31923195 - 31923011
Alignment:
| Q |
1 |
ttagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatcaatcgaaatggtacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31923195 |
ttagatcttgatagttttggctctttggtttcttaggttgctcaaacacacaagaca-tatagtgtcaaaataatggagtatcaatcgaaatggtacaag |
31923097 |
T |
|
| Q |
101 |
aggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt |
186 |
Q |
| |
|
| || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31923096 |
aagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgcaatt |
31923011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 31672442 - 31672626
Alignment:
| Q |
1 |
ttagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatcaatcgaaatggtacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31672442 |
ttagatcttgatagttttggctctttggtttcttaggttgctcaaacacacaagaca-tatagcgtcaaaataatggagtatcaatcgaaatggtacaag |
31672540 |
T |
|
| Q |
101 |
aggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt |
186 |
Q |
| |
|
| || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31672541 |
aagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgcaatt |
31672626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31905267 - 31905083
Alignment:
| Q |
1 |
ttagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatcaatcgaaatggtacaag |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||||||| ||| |||| |||||| ||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31905267 |
ttagatctcgatagttttggctctttggtttcttaggttgctcaaccacataagaca-tatagcgtcaaaataatggagtatcaatcgaaatggtataag |
31905169 |
T |
|
| Q |
101 |
aggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgcaatt |
186 |
Q |
| |
|
| || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31905168 |
aagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgcaatt |
31905083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 52952519 - 52952572
Alignment:
| Q |
288 |
gtaccactgctggaaacaacctcttatgtaaaaaatatgataagactgcgtaca |
341 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52952519 |
gtaccacggttggaaacaacctcttatgtaaaaaatatgataagactgtgtaca |
52952572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 10565602 - 10565654
Alignment:
| Q |
81 |
atcaatcgaaatggtacaagaggaagagagtgaataatttattgccacatcat |
133 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
10565602 |
atcaattgaaatgatacaagaggttgagagtgaacaatttattgccacatcat |
10565654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 22187305 - 22187349
Alignment:
| Q |
297 |
ctggaaacaacctcttatgtaaaaaatatgataagactgcgtaca |
341 |
Q |
| |
|
||||||||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
22187305 |
ctggaaacagcctcttgtgtaaaaaacatgataagactgcgtaca |
22187349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 332
Target Start/End: Original strand, 10163806 - 10163837
Alignment:
| Q |
301 |
aaacaacctcttatgtaaaaaatatgataaga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10163806 |
aaacaacctcttatgtaaaaaatatgataaga |
10163837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 11617703 - 11617659
Alignment:
| Q |
297 |
ctggaaacaacctcttatgtaaaaaatatgataagactgcgtaca |
341 |
Q |
| |
|
|||||||||||||||| ||||||||| | | |||||||||||||| |
|
|
| T |
11617703 |
ctggaaacaacctcttgtgtaaaaaacagggtaagactgcgtaca |
11617659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 19427004 - 19426960
Alignment:
| Q |
297 |
ctggaaacaacctcttatgtaaaaaatatgataagactgcgtaca |
341 |
Q |
| |
|
||||||||| |||||| ||||||||||| | |||||||||||||| |
|
|
| T |
19427004 |
ctggaaacagcctcttgtgtaaaaaatagggtaagactgcgtaca |
19426960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University