View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16269_low_3 (Length: 275)
Name: NF16269_low_3
Description: NF16269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16269_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 4970715 - 4970478
Alignment:
| Q |
19 |
agagtccttcttgtcaaacattcttgttctccttccaatccttcacaactctcatcttcactagatgcattggtagccgaaacatccttcaattgaaaca |
118 |
Q |
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| T |
4970715 |
agagtccttcttgtcaaacattcctgttctccttccaatccttcacaactctcatcttcactagatgcattggtagccgaaacatccttcaattgaaaca |
4970616 |
T |
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| Q |
119 |
agaaaattctcaaaatcccaatcaaa-tataaagtgaacaaaagaataaacactaccataccatgcatgaaataaagtatttgggttttttcatgcctca |
217 |
Q |
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| T |
4970615 |
agaaaattctcaaaatcccagtcaaattataaagtgaacaaaagaataaacac-----taccatgcatgaaataaagtatttgggttttttcatgcctca |
4970521 |
T |
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| Q |
218 |
ccaacataaaatgaaattttataaaaccatgcatgaaataagt |
260 |
Q |
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| T |
4970520 |
ccaacataaaatgaaattttataaaaccatgcatgaaataagt |
4970478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 5035182 - 5035124
Alignment:
| Q |
19 |
agagtccttcttgtcaaacattcttgttctccttccaatccttcacaactctcatcttc |
77 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
5035182 |
agagtccttcttgtcaaacattcttgttctccttccactccttcacaattctcatcttc |
5035124 |
T |
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