View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16269_low_5 (Length: 238)
Name: NF16269_low_5
Description: NF16269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16269_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 2984400 - 2984188
Alignment:
| Q |
17 |
attattctcctaacatcacaatcagacatatgcaagaaacaatgaaaacacacatcatcctcatgtgtagaaatagacactaacattnnnnnnnnnnnga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
2984400 |
attattctcctaacatcacaatcagacatatgcaagaaacaatgaaaacacacatcatcctcatgtgtagaaatagacactatcattaaaaaaaaaaaga |
2984301 |
T |
|
| Q |
117 |
ttacaaaacagaacaactttattaataataatnnnnnnnnnnnntgatatataactaccaaaattaaaatcacatgcttgtcattttaacaatttaatac |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2984300 |
ttacaaaacagaacaactttattaataataataaaaacaaaaaatgatatataactaccaaaattaaaatcacatgcttgtcattttaacaatttaatac |
2984201 |
T |
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| Q |
217 |
aaagagaataatc |
229 |
Q |
| |
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||||||||||||| |
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| T |
2984200 |
aaagagaataatc |
2984188 |
T |
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