View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1626_high_1 (Length: 271)
Name: NF1626_high_1
Description: NF1626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1626_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 15418733 - 15418994
Alignment:
| Q |
10 |
aagaatatgacttgtcaagcaaatggaaagaggttggtttgtgttttggagtagtgtgttaggtgttgttgctattgtggtgtaaaccagaacgcaacaa |
109 |
Q |
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| T |
15418733 |
aagaaaatgacttgtcaaacaaatggaaagaggttggtttgtgttttggagtagtgtgtgaggtgttgttgctattgtggtgtaaaccagaacgcaacaa |
15418832 |
T |
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| Q |
110 |
tagttaactgccattgggttaaaggaagttgaaaagaagagaatttgagaagtgaaaagtgtaattttaaaataaaaaacagtgtgtttctctcaaactt |
209 |
Q |
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| T |
15418833 |
tagttaactgccattgggttaaaggaagttgaaaagaagagaatttgagaagtgaaaagtgtaattttaaaataaaaaacagtgtgtttctctcaaactt |
15418932 |
T |
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| Q |
210 |
tagttagccggccctgtttgcaagcgtccttcacattgctgctaacccagtttttcacgaaa |
271 |
Q |
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| T |
15418933 |
tagttagccagccctgtttgcaagcgtccttcacattgctgctaactcagtttttcacgaaa |
15418994 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 7891554 - 7891608
Alignment:
| Q |
29 |
caaatggaaagaggttggtttgtgttttggagtagtgtgttaggtgttgttgcta |
83 |
Q |
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| T |
7891554 |
caaatggaaagaggttagtttgtgttttggagaagtgtgggaggtgttgttgcta |
7891608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 52075883 - 52075800
Alignment:
| Q |
11 |
agaatatgacttgtcaagcaaatggaaagaggttggtttgtgttttggagtagtgtgttaggtgttgttgctattgtggtgtaa |
94 |
Q |
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| T |
52075883 |
agaaaatgacatgttaagcaaatgaaaagaggttgatttgtattttggagaagtgtgggagatgttgttgctattctgatgtaa |
52075800 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 7290424 - 7290371
Alignment:
| Q |
26 |
aagcaaatggaaagaggttggtttgtgttttggagtagtgtgttaggtgttgtt |
79 |
Q |
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| T |
7290424 |
aagcaaatggaaagaggttggtttgtgttttagagaaatgtgtgaggtgatgtt |
7290371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 33450748 - 33450797
Alignment:
| Q |
29 |
caaatggaaagaggttggtttgtgttttggagtagtgtgttaggtgttgt |
78 |
Q |
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| T |
33450748 |
caaatggaatgatgttggtttgtgttttggagtagtgtgggaggtgttgt |
33450797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 35268436 - 35268400
Alignment:
| Q |
235 |
gtccttcacattgctgctaacccagtttttcacgaaa |
271 |
Q |
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| T |
35268436 |
gtccttcacattgcagctaacccagtttttcatgaaa |
35268400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 10127471 - 10127535
Alignment:
| Q |
26 |
aagcaaatggaaagaggttggtttgtgttttggagtagtgtgttaggtgttgttgctattgtggtg |
91 |
Q |
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| T |
10127471 |
aagcaaatgaaaagaggttgatttgtgttttggagaaatgtg-gaggtgttgttgctattttggtg |
10127535 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 45298500 - 45298538
Alignment:
| Q |
16 |
atgacttgtcaagcaaatggaaagaggttggtttgtgtt |
54 |
Q |
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| T |
45298500 |
atgacttgttaagcaaatggaaagaggttgatttgtgtt |
45298538 |
T |
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