View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1626_high_2 (Length: 214)
Name: NF1626_high_2
Description: NF1626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1626_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 710684 - 710887
Alignment:
| Q |
1 |
aatatgacatttgatgtataagtaaaagctttctgagattattcatttaactcacattgtgttcacgttgtgttggaatcaaatccttgacaagaaagga |
100 |
Q |
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| T |
710684 |
aatatgacatttgatgtataagtaaaagctttctgagattattcatttaactcacattgtgttcacgttgtgttggaatcaaatccttgacaagaaagga |
710783 |
T |
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| Q |
101 |
taggataacttgcatgtctgcctacaaatggtnnnnnnnnnnnnncctagcttggaagtggtacggaaccattaacatcatagtggtgcattcatgtaga |
200 |
Q |
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| T |
710784 |
taggataacttgcatgtctgcctacaaatggtaaaaaagaaaaaacctagcttggaagtggtacggaaccattaacatcatagtggtgcattcatgtaga |
710883 |
T |
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| Q |
201 |
gatt |
204 |
Q |
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|||| |
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| T |
710884 |
gatt |
710887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 739644 - 739522
Alignment:
| Q |
81 |
aaatccttgacaagaaaggataggataacttgcatgtctgcctacaaatggtnnnnnnnnnnnnncctagcttggaagtggtacggaaccattaacatca |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
739644 |
aaatccttgacaagaaaggataggataacttgcatgtctgcctacaaatggtaaaaaaaaaaaa-cctagcttggaagtggtacggaaccattaacatca |
739546 |
T |
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| Q |
181 |
tagtggtgcattcatgtagagatt |
204 |
Q |
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| T |
739545 |
tagtggtgcattcatgtagagatt |
739522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 746143 - 746264
Alignment:
| Q |
81 |
aaatccttgacaagaaaggataggataacttgcatgtctgcctacaaatggtnnnnnnnnnnnnncctagcttggaagtggtacggaaccattaacatca |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
746143 |
aaatccttgacaagaaaggataggataacttgcatgtctgcctacaaatggtaaaaaaaaaaa--cctagcttggaagtggtacggaaccattaacatca |
746240 |
T |
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| Q |
181 |
tagtggtgcattcatgtagagatt |
204 |
Q |
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|||||||||||||||||||||||| |
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| T |
746241 |
tagtggtgcattcatgtagagatt |
746264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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