View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16270_high_3 (Length: 325)
Name: NF16270_high_3
Description: NF16270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16270_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 31117014 - 31116704
Alignment:
| Q |
14 |
aatatgggcaagtatttgggggaaaacatcagtccaggtagatccactagggaaaaagtttcataacatcattgacaaaattcaaaacagactaagtggt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31117014 |
aatatgggcaagtatttgggggaaaacatcagtccaggtagatccactagggaaaaagtttcataacatcattgaaaaaattcaaaacagactaagtggt |
31116915 |
T |
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| Q |
114 |
tggaagcaataatgcttaagttttgcccacagacttactttatctaaattagctttgagctttataccatactatcatatgcagtatgctaagctcccta |
213 |
Q |
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| T |
31116914 |
tggaagcaataatgcttaagttttgccgacagacttactttatctaaatcagctttgagctttataccatactatcatatgcagtatgctaagctcccta |
31116815 |
T |
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| Q |
214 |
aaaccctttgtagcgaaatg--nnnnnnnntcaaaggagctttttatgggatgatattgaccaatcttgcagaccccatcttgtgggatgggacatttgt |
311 |
Q |
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| T |
31116814 |
aaaccctttgtagcgaaatgaaaaaaaaaatcaaaggagctttttatgggatgatattaaccaatcttgcagaccccatcttgtgggatgggacatttgt |
31116715 |
T |
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| Q |
312 |
tgtcttcctaa |
322 |
Q |
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||||||||||| |
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| T |
31116714 |
tgtcttcctaa |
31116704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 48899393 - 48899084
Alignment:
| Q |
14 |
aatatgggcaagtatttgggggaaaacatcagtccaggtagatccactagggaaaaagtttcataacatcattgacaaaattcaaaacagactaagtggt |
113 |
Q |
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| T |
48899393 |
aatatgggcaagtatttgggggctaacattagtgcaggtagagctactaggggaaa-gtttcataacgtcattgacaaaattcaaaatagactaagtggt |
48899295 |
T |
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| Q |
114 |
tggaagcaataatgcttaagttttgcccacagacttactttatctaaattagctttgagctttataccatactatcatatgcagtatgctaagctcccta |
213 |
Q |
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| T |
48899294 |
tggaagcaacaatgctta-gttttgtcggtagacttactttatctaaattagttttgagctctataccttactatcatatgcagtatgctaagctcccta |
48899196 |
T |
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| Q |
214 |
aaaccctttgtagcgaaatgnnnnnnnntcaaaggagctttttatgggatgatattgaccaatcttgcagaccccatcttgtgggatgggacatttgttg |
313 |
Q |
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||| ||||||| ||| ||| ||| |||||||||||||||| ||||| |||||||||| ||| | |||||||||| ||||||||||||||||| |
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| T |
48899195 |
aaatgctttgtaacgagatggaaaaaattcagaggagctttttatgggttgatactgaccaatctcgcaaaacccatcttgttggatgggacatttgttg |
48899096 |
T |
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| Q |
314 |
tcttcctaagaa |
325 |
Q |
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|||||||||||| |
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| T |
48899095 |
tcttcctaagaa |
48899084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 14784654 - 14784767
Alignment:
| Q |
25 |
gtatttgggggaaaacatcagtccaggtagatccactagggaaaaagtttcataacatcattgacaaaattcaaaacagactaagtgg-ttggaagcaat |
123 |
Q |
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|||||||| || |||||| |||||||||||| | || | || |||||||||||||||| ||||||||||| ||| |||| ||||||| |||||||||| |
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| T |
14784654 |
gtatttggaggcaaacataagtccaggtagagctaccaagg-gaaagtttcataacatcgttgacaaaattaaaagcagagtaagtggtttggaagcaac |
14784752 |
T |
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| Q |
124 |
aatgcttaagttttg |
138 |
Q |
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| T |
14784753 |
aatgcttgagttttg |
14784767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 35197253 - 35197206
Alignment:
| Q |
186 |
tatcatatgcagtatgctaagctccctaaaaccctttgtagcgaaatg |
233 |
Q |
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| T |
35197253 |
tatcatatgcagtatgctaagctacctaaaactctttgcagtgaaatg |
35197206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 24783739 - 24783776
Alignment:
| Q |
186 |
tatcatatgcagtatgctaagctccctaaaaccctttg |
223 |
Q |
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| T |
24783739 |
tatcatatgcagtatgctaagctacctaaaactctttg |
24783776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 8056603 - 8056566
Alignment:
| Q |
186 |
tatcatatgcagtatgctaagctccctaaaaccctttg |
223 |
Q |
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| T |
8056603 |
tatcatatgcagtatgctaagctacctaaaactctttg |
8056566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 46020647 - 46020610
Alignment:
| Q |
186 |
tatcatatgcagtatgctaagctccctaaaaccctttg |
223 |
Q |
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| T |
46020647 |
tatcatatgcagtatgctaagctacctaaaactctttg |
46020610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 49574283 - 49574246
Alignment:
| Q |
186 |
tatcatatgcagtatgctaagctccctaaaaccctttg |
223 |
Q |
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| T |
49574283 |
tatcatatgcagtatgctaagctacctaaaactctttg |
49574246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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