View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16271_high_1 (Length: 566)
Name: NF16271_high_1
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16271_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 5809352 - 5809886
Alignment:
| Q |
16 |
caaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaact |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5809352 |
caaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgtcgaggcgagaattattttatccaaact |
5809451 |
T |
|
| Q |
114 |
accaaatttcccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaact |
213 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5809452 |
accaaatttccccaaaatctttgcaagttcattttcggtggcaccataaggcaagttctacgctaaaattacatggttacttcttttcaagccatcaact |
5809551 |
T |
|
| Q |
214 |
ttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaatac |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5809552 |
ttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgtt-tttgtttctgaaatcacttgtgtttctcccagagcaatac |
5809650 |
T |
|
| Q |
314 |
gtacagcaaggtcatcagcttctcgattcagtaaatcacttttactaacaccatatttccgagcaacattttctacaatctattaacatcaacacgtgat |
413 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809651 |
gtacagcaagatcatcagcttctcgatccagtaaatcacttttactaacaccatatttccgagcaacattttctacaatctattaacatcaacacgtgat |
5809750 |
T |
|
| Q |
414 |
taaaatatgcatgcacctataaataagagaaaaagcaacctgctagctatacagtataaccaaaaacgtttgaggaagcaaaattgacaagacaaattat |
513 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
5809751 |
taaaatatgcatacacctataaataagagaaaaagcaacctgctagctatacagtataaccaaaaacgtttgaggaagcaaaatcgaccagacaaattat |
5809850 |
T |
|
| Q |
514 |
gttaattctatcactagaaaacaacatatttgtacc |
549 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
5809851 |
gttaattccatcactagaaaacaacatatttgtacc |
5809886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 421
Target Start/End: Original strand, 37754793 - 37755190
Alignment:
| Q |
26 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
122 |
Q |
| |
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|||||||||| |||| ||||||| | |||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
37754793 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37754891 |
T |
|
| Q |
123 |
cccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttc |
222 |
Q |
| |
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|||||| |||||||||||||||||||| || |||||||| ||||| || || ||||||| |||||||||||||||||||| |||||||||||||| ||| |
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| T |
37754892 |
cccaaacatctttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttcacgccatcaactttacaattc |
37754991 |
T |
|
| Q |
223 |
gcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaatacgtacagcaa |
322 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| |||| | |||||| | |||| ||||| |
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| T |
37754992 |
acaagctcctccagagactccacattcactccagcttttttaaatgcattttttgtttcaaaaatcacttgagtttgtgccagagaatgacgtgaagcaa |
37755091 |
T |
|
| Q |
323 |
ggtcatcagcttctcgattcagtaaatcacttttactaacaccatatttccgagcaacattttctacaatctattaacatcaacacgtgattaaaatat |
421 |
Q |
| |
|
| |||||||||||| ||| || ||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
37755092 |
gatcatcagcttctggatcaagaaaatcacttttactaacaccatatttccgagaagcgttttctgcaatctattaacatcaacacatgattaaaatat |
37755190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 421
Target Start/End: Original strand, 37760767 - 37761164
Alignment:
| Q |
26 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
122 |
Q |
| |
|
|||||||||| |||| ||||||| | |||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
37760767 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37760865 |
T |
|
| Q |
123 |
cccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttc |
222 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||| ||||| || || ||||||| |||||||||||||||||||| |||||||||||||| ||| |
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|
| T |
37760866 |
cccaaacatctttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttcacgccatcaactttacaattc |
37760965 |
T |
|
| Q |
223 |
gcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaatacgtacagcaa |
322 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| |||| | |||||| | |||| ||||| |
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|
| T |
37760966 |
acaagctcctccagagactccacattcactccagcttttttaaatgcattttttgtttcaaaaatcacttgagtttgtgccagagaatgacgtgaagcaa |
37761065 |
T |
|
| Q |
323 |
ggtcatcagcttctcgattcagtaaatcacttttactaacaccatatttccgagcaacattttctacaatctattaacatcaacacgtgattaaaatat |
421 |
Q |
| |
|
| |||||||||||| ||| || ||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||| |||||||||||| |
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| T |
37761066 |
gatcatcagcttctggatcaagaaaatcacttttactaacaccatatttccgagaagcgttttctgcaatctattaacatcaacacatgattaaaatat |
37761164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 61 - 421
Target Start/End: Complemental strand, 38605875 - 38605513
Alignment:
| Q |
61 |
ggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcattttcggtggcacc |
158 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||| |
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|
| T |
38605875 |
ggaaaaataccagggccaatgttcttgtcgaggggagaattattttatccaaactaccaaatttcccaaacatctctgcaagttcattttccgtagcacc |
38605776 |
T |
|
| Q |
159 |
ataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagct |
258 |
Q |
| |
|
||| ||||| || || ||||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
38605775 |
atatggcaaattttttgctaaaagtacatggttacttcttttaacgccataaactttaccctccgcaagctcctccaaagactccacattcactccagcc |
38605676 |
T |
|
| Q |
259 |
tttttaaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaatacgtacagcaaggtcatcagcttctcgattcagtaaatcacttttac |
358 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| | |||||||||||||||| | | |||||| |||||||||||| || || |||||||||||||| |
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|
| T |
38605675 |
tttttaaatgcattttttgtttctaaaatcacatcagtttctcccagagcaacatttgcagcaacatcatcagcttctggacccaataaatcacttttac |
38605576 |
T |
|
| Q |
359 |
taacaccatatttccgagcaacattttctacaatctattaacatcaacacgtgattaaaatat |
421 |
Q |
| |
|
||||||||| |||||||| ||| |||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
38605575 |
taacaccatgtttccgagtaacgttttctgtaatctattaacatcaacacatgattaaaatat |
38605513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 65 - 421
Target Start/End: Original strand, 37738980 - 37739338
Alignment:
| Q |
65 |
aaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcattttcggtggcaccataa |
162 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
37738980 |
aaataccagggccaatgtttttgtcgagggcagaattattttatccaaactaccaaatttcccaaacatctttgcaagatcattttccgtagcaccatat |
37739079 |
T |
|
| Q |
163 |
ggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagcttttt |
262 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| || ||||| ||||||||||||||| |
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|
| T |
37739080 |
ggcaaatttttcgctaaaagtacatggttacttcttttcctgccatcaactttacccttcgcatgctcctccagagactccacgttcactccagcttttc |
37739179 |
T |
|
| Q |
263 |
taaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaata-cgtacagcaaggtcatcagcttctcgattcagtaaatcacttttactaa |
361 |
Q |
| |
|
||||||| || ||||||||| |||| | | |||||| |||||| |||| ||| |||||| ||||||||||| ||| ||| |||||||||||||||| |
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|
| T |
37739180 |
taaatgcattttttgtttctttaatcccgtcagtttctgccagag-aataccgtgaagcaagaccatcagcttctggatccagaaaatcacttttactaa |
37739278 |
T |
|
| Q |
362 |
caccatatttccgagcaacattttctacaatctattaacatcaacacgtgattaaaatat |
421 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37739279 |
caccatgtttccgagcagcgttttctacaatctattaacatcaacacatgattaaaatat |
37739338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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