View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16271_high_13 (Length: 203)

Name: NF16271_high_13
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16271_high_13
NF16271_high_13
[»] chr4 (3 HSPs)
chr4 (15-183)||(7371397-7371566)
chr4 (15-141)||(10436179-10436305)
chr4 (155-183)||(32139383-32139411)
[»] chr7 (1 HSPs)
chr7 (154-183)||(46987129-46987158)
[»] chr5 (1 HSPs)
chr5 (154-183)||(31958457-31958486)
[»] chr1 (3 HSPs)
chr1 (154-183)||(21638156-21638185)
chr1 (154-183)||(23730368-23730397)
chr1 (155-183)||(51429203-51429231)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 7371397 - 7371566
Alignment:
Q  15 gagcagagagtgaaagcctcaagtccatactgacaggagcccctccaagtaagcttggaaggatggctttggtggatgctctggcacaacatattcaaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7371397 gagcagagagtgaaagcctcaagtccatactgacaggagcccctccaagtaagcttggaaggatggctttggtggatgctctggcacaacagattcaaaa 7371496  T
Q  115 tcgcatgaagctgcgggtgcctaacctataag-nnnnnnnggtggtgtccggggttcgaaccccggacct 183  Q
    ||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||||    
T  7371497 tcgcatgaagctgcgggtgcctaacctataagttttttttgttggtgtccggggttcgaaccccggacct 7371566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 10436179 - 10436305
Alignment:
Q  15 gagcagagagtgaaagcctcaagtccatactgacaggagcccctccaagtaagcttggaaggatggctttggtggatgctctggcacaacatattcaaaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  10436179 gagcagagagtgaaagcctcaagtccatactgacaggagcccctccaagtaagcttggaaggatagctttggtggatgctctggcacagcagattcaaaa 10436278  T
Q  115 tcgcatgaagctgcgggtgcctaacct 141  Q
    |||||||||||||||||||||||||||    
T  10436279 tcgcatgaagctgcgggtgcctaacct 10436305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 32139411 - 32139383
Alignment:
Q  155 gtggtgtccggggttcgaaccccggacct 183  Q
    |||||||||||||||||||||||||||||    
T  32139411 gtggtgtccggggttcgaaccccggacct 32139383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 46987158 - 46987129
Alignment:
Q  154 ggtggtgtccggggttcgaaccccggacct 183  Q
    ||||||||||||||||||||||||||||||    
T  46987158 ggtggtgtccggggttcgaaccccggacct 46987129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 31958457 - 31958486
Alignment:
Q  154 ggtggtgtccggggttcgaaccccggacct 183  Q
    ||||||||||||||||||||||||||||||    
T  31958457 ggtggtgtccggggttcgaaccccggacct 31958486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 21638185 - 21638156
Alignment:
Q  154 ggtggtgtccggggttcgaaccccggacct 183  Q
    ||||||||||||||||||||||||||||||    
T  21638185 ggtggtgtccggggttcgaaccccggacct 21638156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 23730368 - 23730397
Alignment:
Q  154 ggtggtgtccggggttcgaaccccggacct 183  Q
    ||||||||||||||||||||||||||||||    
T  23730368 ggtggtgtccggggttcgaaccccggacct 23730397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 51429203 - 51429231
Alignment:
Q  155 gtggtgtccggggttcgaaccccggacct 183  Q
    |||||||||||||||||||||||||||||    
T  51429203 gtggtgtccggggttcgaaccccggacct 51429231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University