View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16271_high_8 (Length: 343)
Name: NF16271_high_8
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16271_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 88 - 328
Target Start/End: Complemental strand, 40328512 - 40328275
Alignment:
| Q |
88 |
aaacaatgtttgagtatagagcatagagggtatattgtagaaagaaagaaaagtaatagatgaccattctattttaggtttgtggatgtgtaactttctg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40328512 |
aaacaatgtttgagtatagagcatagagggtatattatagaaagaaagaaaagtaatagatgaccattctattttaggtttgtggatgtgtaactttctg |
40328413 |
T |
|
| Q |
188 |
agtggcacaggaaggaagtgtttgtttaagggattgtgacaaagccaattcaatactagtgccnnnnnnnnnnnnnattacgtttgattaattacttttg |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40328412 |
agtggcacaggaaggaagtgtttgtttaagggattgtgacaaagccaattcaatactagtgc---tttttttttttattacgtttgattaattacttttg |
40328316 |
T |
|
| Q |
288 |
atttcaagctgttgtgtgttgttccattttcttaacctatg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40328315 |
atttcaagctgttgtgtgttgttccattttcttaacctatg |
40328275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University