View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16271_low_10 (Length: 271)
Name: NF16271_low_10
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16271_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 7846746 - 7847005
Alignment:
| Q |
12 |
tatgtattttcattccagccatcatatgtattttggataaacaccttatgtttctgcagctttacatggcaaggaagtccatatcttcattatattgata |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7846746 |
tatgtattttcattccagccatcatatgtattttggataaacaccttatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgata |
7846845 |
T |
|
| Q |
112 |
tttacggtcaaaaacgagatggctgcaatagcctccagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtgttga |
211 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7846846 |
tttacagtcaaaaacgagatggctgcaatagcctccagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtgttga |
7846945 |
T |
|
| Q |
212 |
aataat---------------atccaaaatttaattttctcatggttcatgagttgaaat |
256 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7846946 |
aataatggatgcaaacagtacatccaaaatttaattttctcatggttcatgagttgaaat |
7847005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 11059586 - 11059791
Alignment:
| Q |
12 |
tatgtattttcattccagccatcatatgtattttggataaacaccttatgtttctgcagctttacatggcaaggaagtccatatcttcattatattgata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11059586 |
tatgtattttcattccagccatcatatgtattttggataaacacattatttttctgcagctttacatggcaaggaagtccatatcgtcattatattgata |
11059685 |
T |
|
| Q |
112 |
tttacggtcaaaaacgagatggctgcaatagcctccagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtgttga |
211 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
11059686 |
tttacagtcaaaaacgagatggctgcaatagcctccagtggaaaatgaatagaactggtggatctaaatggggccagtggtatccttggaaaagtattga |
11059785 |
T |
|
| Q |
212 |
aataat |
217 |
Q |
| |
|
|||||| |
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|
| T |
11059786 |
aataat |
11059791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 11073261 - 11073466
Alignment:
| Q |
12 |
tatgtattttcattccagccatcatatgtattttggataaacaccttatgtttctgcagctttacatggcaaggaagtccatatcttcattatattgata |
111 |
Q |
| |
|
|||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
11073261 |
tatgaatttacattccggccatcatatgtattttggataaacaccttatttttctgcagctttacatggcagggaagtccatatcgtcattatattgata |
11073360 |
T |
|
| Q |
112 |
tttacggtcaaaaacgagatggctgcaatagcctccagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtgttga |
211 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11073361 |
tttacagtcaaaaacgagatggctgcgatgatcttcagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtattga |
11073460 |
T |
|
| Q |
212 |
aataat |
217 |
Q |
| |
|
|||||| |
|
|
| T |
11073461 |
aataat |
11073466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 11041253 - 11041048
Alignment:
| Q |
12 |
tatgtattttcattccagccatcatatgtattttggataaacaccttatgtttctgcagctttacatggcaaggaagtccatatcttcattatattgata |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||| |||||||||||| | |
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|
| T |
11041253 |
tatgtattttcattccagccatcgtatgtattttggaaaaacacgttattcttctgcagttttacatggcaaggaagtccatatcgtcattatattgaaa |
11041154 |
T |
|
| Q |
112 |
tttacggtcaaaaacgagatggctgcaatagcctccagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtgttga |
211 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| |||||||||| |||||||| |
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|
| T |
11041153 |
tttacagtcaaaaacgagatgggtgcaatagcctccagtggaaaatgaataaaactggtggatttaaatcggggcagttctatccttggagtagtgttga |
11041054 |
T |
|
| Q |
212 |
aataat |
217 |
Q |
| |
|
|||||| |
|
|
| T |
11041053 |
aataat |
11041048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 10973448 - 10973646
Alignment:
| Q |
18 |
ttttcattccagccatcatatgtattttggataaacaccttatgtttctgcagctttacatggcaaggaagtccatatcttcattatattgatatttacg |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || ||| |||| || ||||||||||| |||| ||||| ||| ||| |||||||||||| |||| |
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|
| T |
10973448 |
ttttcattcaagccatcatatgtattttggaaaagcacattattcttttgcagctttacgtggccaggaaatcccgatcgtcattatattgaagtttata |
10973547 |
T |
|
| Q |
118 |
gtcaaaaacgagatggctgcaatagcctccagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtgttgaaataa |
216 |
Q |
| |
|
|||| ||||||||| || | | || | |||||||||||| || ||||||||||| | ||||||| ||| ||||||||||| ||||||||||||| |
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|
| T |
10973548 |
agcaaagacgagatggatgtgaaaaccgcgagtggaaaatgattaaaactggtggatatttatgggggcagttttatccttggaatagtgttgaaataa |
10973646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 5922314 - 5922265
Alignment:
| Q |
66 |
tgcagctttacatggcaaggaagtccatatcttcattatattgatattta |
115 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||||| |||||||||| |
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|
| T |
5922314 |
tgcagctttacatggaaaggaagtccatatcgtcattatcttgatattta |
5922265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 5931445 - 5931396
Alignment:
| Q |
66 |
tgcagctttacatggcaaggaagtccatatcttcattatattgatattta |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
5931445 |
tgcagctttacatggaaaggaagtccatatcatcattatcttgatattta |
5931396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 10999849 - 11000049
Alignment:
| Q |
17 |
attttcattccagccatcatatgtattttggataaacaccttatgtttctgcagctttacatggcaaggaagtccatatcttcattatattgatatttac |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || || |||| |||||||||||||||||| ||||| ||| ||| |||||||||||| |||| |
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|
| T |
10999849 |
attttcattcacgccatcatatgtattttggtaaagtacattattcttctgcagctttacatggtcaggaaatcctaatcgtcattatattgaagtttat |
10999948 |
T |
|
| Q |
117 |
ggtcaaaaacgagatggctgcaatagcctccagtggaaaatgaatagaactggtggatctaaatgggggaagtggtatccttggaaaagtgttgaaataa |
216 |
Q |
| |
|
|||||||||||| || | | | |||||||||| |||| ||||||||||| | ||||||||||| | ||||||||| |||||| |||||| |
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|
| T |
10999949 |
aagcaaaaacgagatatttgtcacaattgcgagtggaaaataaataaaactggtggatatttatgggggaagttttttccttggaatagtgttcaaataa |
11000048 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
11000049 |
t |
11000049 |
T |
|
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