View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16271_low_2 (Length: 546)
Name: NF16271_low_2
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16271_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 15 - 529
Target Start/End: Complemental strand, 37960556 - 37960042
Alignment:
| Q |
15 |
ttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcat |
114 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
37960556 |
ttataccgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtatcgaaaagaagataagacatttaaagagtcat |
37960457 |
T |
|
| Q |
115 |
gctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37960456 |
gctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctgtaactgtggttgctggttcaccgaaattggctgttt |
37960357 |
T |
|
| Q |
215 |
atgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatcttgattcgtccggttcgatttctctttctgattgtagagatggcggagg |
314 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37960356 |
atgagacagattttgggtgggggaagcctaagaaatctgatgctgttcatcttgattcgtccggttcgatttctctttctgattgtagagacggcggagg |
37960257 |
T |
|
| Q |
315 |
tggaattgaagttggtttggctcttgagaggtctagaatcactaatttcatcaacatctttcaagaacaacttgataatatttgtagcatgtgaatgaac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37960256 |
tggaattgaagttggtttggctcttgagaggtctagaatcactaatttcatcaacatctttcaagaacaacttgataatatttgtagcatgtgaatgaac |
37960157 |
T |
|
| Q |
415 |
taaggaaacttataatgagtttgttttctcaatttaggtaaaacattccaatttcctttttcttttgttaccaatttgttgttcaataagtttggcaaac |
514 |
Q |
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| T |
37960156 |
taaggaaacttataatgagtttgttttctcaatttaggcaaaacattccaatttcctttttcttttgttaccaatttgttgttcaataagtttggcaaac |
37960057 |
T |
|
| Q |
515 |
attaaagtgaactct |
529 |
Q |
| |
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||||||||||||||| |
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| T |
37960056 |
attaaagtgaactct |
37960042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 149 - 445
Target Start/End: Complemental strand, 37954613 - 37954316
Alignment:
| Q |
149 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaa |
248 |
Q |
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||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggggaagcctaagaa |
37954514 |
T |
|
| Q |
249 |
atctgatgcagttcatcttgattcgtccggttcgatttctctttctgattgtagagatggcggaggtggaattgaagttggtttggctcttgagaggtct |
348 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||||| |||||||||||||| |
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| T |
37954513 |
atctgatgcagttcatcttgattcatccggttcgatttctctttctgattgtagaggtggtggaggtggaattaaggttggtttgactcttgagaggtct |
37954414 |
T |
|
| Q |
349 |
agaatcactaatttcatcaacatctttcaagaacaacttgataatatttgtagcatgtgaatgaact-aaggaaacttataatgagtttgttttctca |
445 |
Q |
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||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
37954413 |
agaatgattaatttcatcaacatctttcaagaacagcttgataatatttctagcatgtgaatgaactaaaggaaacttctaatgagtttgttctctca |
37954316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 37915639 - 37916037
Alignment:
| Q |
15 |
ttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcat |
114 |
Q |
| |
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||||||||| | |||||| || | ||||||| |||||||| |||| ||| || ||| ||| || ||||||| |||||||||| |||| |||||| || |
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| T |
37915639 |
ttatactgtagttgtaaataggggtgagttagttggaaaagatggtattcttgtggcggcaaatgctattgaacggaagataagagatttcaagagtgat |
37915738 |
T |
|
| Q |
115 |
gctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgttt |
214 |
Q |
| |
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|| ||||| |||| |||||| |||||| |||||||||||||||| |||||| ||||| ||| | | ||||| |||| || || ||| | | ||||| |
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| T |
37915739 |
gccttgttgggagttgaaacgttgatgcctgattatagggaaataataaaaccaggtaactctgttaaaatggtttctgggtcgcctaaacttgatgttt |
37915838 |
T |
|
| Q |
215 |
atgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatcttgattcgtccggttcgatttctctttctgattgtagagatggcggagg |
314 |
Q |
| |
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|||| || |||||||||||||| || || |||||||| |||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
37915839 |
atgagactgattttgggtggggaaaaccaaagaaatccgatgtagtgcatattgattcgtccagttcgatttctctttctgattgtagagatggtcgagg |
37915938 |
T |
|
| Q |
315 |
tggaattgaagttggtttggctcttgagaggtctagaatcactaatttcatcaacatctttcaagaacaacttgataatatttgtagcatgtgaatgaa |
413 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||| | | |||||||||| | |||||||||||||||||||||| |
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| T |
37915939 |
tggaattgaggttggtttggctcttgagaggtctcaaatgactaatttcatcagtatctataatgaacaacttggtgatatttgtagcatgtgaatgaa |
37916037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 81 - 413
Target Start/End: Original strand, 37907552 - 37907874
Alignment:
| Q |
81 |
tattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtcttta |
180 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||||||| |||| | | |||||||||||| || || |
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| T |
37907552 |
tatttaaaagaagataagagattttaagagtgatgctttgttagaagctgaaacgttgatacctgattatatggaattattaaaacctggtaactcattt |
37907651 |
T |
|
| Q |
181 |
actgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatcttgattcgtccggtt |
280 |
Q |
| |
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||||||||||| ||||| ||| | | ||||| ||| || |||||||||||||| || || ||||||||||||||||| ||| ||||||||| | ||| |
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| T |
37907652 |
gtagtggttgctgggtcacctaaacttgatgtttgtgagactgattttgggtggggaaaaccaaagaaatctgatgcagtgcatattgattcgttccgtt |
37907751 |
T |
|
| Q |
281 |
cgatttctctttctgattgtagagatggcggaggtggaattgaagttggtttggctcttgagaggtctagaatcactaatttcatcaacatctttcaaga |
380 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||| ||| ||| ||||||||| |||| | |||| |
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| T |
37907752 |
cgatttctctttctgattgtagagatggtgg----------gaggttggtttggctcttgagaggtctcaaatgactgctttcatcaatatctataaaga |
37907841 |
T |
|
| Q |
381 |
acaacttgataatatttgtagcatgtgaatgaa |
413 |
Q |
| |
|
|||| ||| | |||||||||||| |||||||| |
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|
| T |
37907842 |
acaatttggtgatatttgtagcaactgaatgaa |
37907874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 21 - 399
Target Start/End: Original strand, 3783787 - 3784174
Alignment:
| Q |
21 |
tgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcat---gct |
117 |
Q |
| |
|
||||| ||||||||| | ||||||| |||||| ||||||||||||| ||||| ||| |||||| |||| |||||||||| |||| |||||| || ||| |
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|
| T |
3783787 |
tgtggttgtaaagagggctgagttagttggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagataagagatttcaagagtgataatgct |
3783886 |
T |
|
| Q |
118 |
ttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatg |
217 |
Q |
| |
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|||||||| || || | || |||||| |||| ||| | |||||||||||||||||| | | ||||||| ||||| ||||| | |||||||| |
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| T |
3783887 |
ttgttaggtcctaaatggtggacttctgatcatagtgaattatcaaaacctggtaagtctgttgtaggaattgctggctcacctaaatttgatgtttatg |
3783986 |
T |
|
| Q |
218 |
atacagattttgggtgggggaagcctaagaaatctgatgcagttcatcttgattcgtccggttcg------atttctctttctgattgtagagatggcgg |
311 |
Q |
| |
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| || || || ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| || |
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|
| T |
3783987 |
agactgacttcgggtgggggaagcctaaaaaatctgatgcagttcatcttgattcgtcgtcttcgatttctatttctctttctgattgtagagatggtgg |
3784086 |
T |
|
| Q |
312 |
aggtggaattgaagttggtttggctcttgagaggtctagaatcactaatttcatcaacatctttcaagaacaacttgataatatttgt |
399 |
Q |
| |
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|||||||||| | |||||||||||||||||| | | ||| |||||||||| ||| ||||| ||| ||||| ||||| | |||||| |
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| T |
3784087 |
aggtggaattcaggttggtttggctcttgaggagattcaaatgactaatttcagcaaaatcttccaacaacaagttgatcagatttgt |
3784174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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