View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16271_low_3 (Length: 530)
Name: NF16271_low_3
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16271_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 10 - 514
Target Start/End: Complemental strand, 26473078 - 26472574
Alignment:
| Q |
10 |
acatcatcaactgaagaccattgttggtataattgcatccaacaatccgcctgattcttcttgtgaatcttacttttaagaatttgaaccaagcattcgc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26473078 |
acatcatcaactgaagaccattgttggtataattgcatccaacaatccgcctgattcttcttctgaatcttacttttaagaatttgaaccaagcattcgc |
26472979 |
T |
|
| Q |
110 |
ctttaatcctcccatgtaaagttatgtaattagcctctatggttaacaaagctctaatatctcttatagcactatcataatcatctaatgcaatatacaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26472978 |
ctttaatcctcccatgtaaagttatgtaattagcctctatggttaacaaagctctaatatctcttatagcactatcatagtcatctaatgcaatatacag |
26472879 |
T |
|
| Q |
210 |
ccaagccctcaactctaaacaatccggtgaaagcttaaatcctagaaacttatccaactccataatcccttcctttatttgcttctcctcgactttctcc |
309 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26472878 |
ccatgccctcaactctaaacaatcaggtgaaagcttaaatcctagaaacttatctaactccataatcccttcctttatttgcttctcctcgactttttcc |
26472779 |
T |
|
| Q |
310 |
aatgctctatatttatacggaaatgaaagtgaaggatcgagttgagttgcaaaatccaaatcaaaacctttttctcttcccatattgtacaatgctctct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26472778 |
aatgctctatatttatacggaaatgaaagtgaaggatcgagttgagttgcaaaatccaaatcaaaacctttttctcttcccatattgtacaatgctctct |
26472679 |
T |
|
| Q |
410 |
cttgatacatccatccaactggtttatactcgaatatgagtgaactaattaacttataagcggaatatggttgaccttgtttatgcttcgttctagccac |
509 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26472678 |
cttgatacatccaaccgactggtttatactcgaatatgagtgaactaattaacttataagctgaatatggttgaccttgtttatgcttcgttctagccac |
26472579 |
T |
|
| Q |
510 |
acctg |
514 |
Q |
| |
|
||||| |
|
|
| T |
26472578 |
acctg |
26472574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University