View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16271_low_4 (Length: 514)
Name: NF16271_low_4
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16271_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Complemental strand, 34047640 - 34047161
Alignment:
| Q |
18 |
aactatcccaaaacatatttagatatgcagtggagaaaggagagacaaaggttccaacatccaagacatctatttgaaacctaatgaatgaatg------ |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34047640 |
aactatcccaaaacatatttagatatgcagtggagaaaggagagacaaaagttccaacatccaagacatctatttgaaacctaatgaatgaatgaatgaa |
34047541 |
T |
|
| Q |
112 |
--gtcttgtccatgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcatatattctctcccaaacaacatccataa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34047540 |
cggtcttgtccatgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcatatattctctcccaaacaacatccataa |
34047441 |
T |
|
| Q |
210 |
acctgcaagtgaacgaacatggaaggttttgttgtgaaaacaaaaagagcatatgggttgagtgaaagtataggtgctactcttttgttatcaataaata |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34047440 |
acctgcaagtgaacgaacatggaaggttttgttgtgaaaacaaaaagagcatatgggttgagtgaaagtataggtgctactcttttgttatcaacaaata |
34047341 |
T |
|
| Q |
310 |
tgaacccttaacttcttttaaatgatccaacagtatattattgaatattattgaaccacacacttcttgttgtgaaatagccaagagtaatttcttaaca |
409 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
34047340 |
tgaacccttaacttcttttaaatgatccaacagtatattat----------tgaaccacacacttcttgttgt-----------gagtaatttcttaaca |
34047262 |
T |
|
| Q |
410 |
taaagaatataaaaaacctattgtgaaatttttgggtaagtgaatgaattaaatcaaaaccgtaaaagaggagtgctaatcatagccaagaataatctac |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
34047261 |
taaagaatataaaaaacctattgtgaaatttttgggtaagtgaatgaattaaatcaaaaccgtaaaagaggagtgctaatcatagccaagagtaatatac |
34047162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 38644772 - 38644933
Alignment:
| Q |
21 |
tatcccaaaacatatttagatatgcagtggagaaaggagagacaaaggttccaacatccaagacatctatttgaaacctaatgaatgaatggtcttgtcc |
120 |
Q |
| |
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||||||||||||||||| ||||||||| ||||| |||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
38644772 |
tatcccaaaacatattttgatatgcagcggagagaggaaagacaaaagttccaacatccaagacatct--ttgtaacctaatgaatgaatggtcttgtcc |
38644869 |
T |
|
| Q |
121 |
atgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcatat |
184 |
Q |
| |
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||| ||||||||||||||||||| |||| |||| |||||||||| | |||| |||||||||||| |
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| T |
38644870 |
atgccatgaatgtaattgttttccatagttttctttgcacaaaattggcttccaagattcatat |
38644933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 38648312 - 38648355
Alignment:
| Q |
264 |
gggttgagtgaaagtataggtgctactcttttgttatcaataaa |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38648312 |
gggttgagtgaaagtataggtgctactcttttgttatcaataaa |
38648355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 21921815 - 21921682
Alignment:
| Q |
183 |
atattctctcccaaacaacatccataaacctgcaagtgaacgaacatggaaggttttgttgtgaaaacaaaaagagcatatgggttgagtg----aaagt |
278 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||| ||||| |
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| T |
21921815 |
atattctctcccaaacaacatcgatgaacctgcaagtgaac----atggaaggttttgttgtgaaaacgaaaagagcaaa--ggttgagtgggacaaagt |
21921722 |
T |
|
| Q |
279 |
ataggtgctactcttttgttatcaataaatatgaaccctt |
318 |
Q |
| |
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||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
21921721 |
ataggtgttactcttttattatcaataaatttgaaccctt |
21921682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 21921926 - 21921839
Alignment:
| Q |
95 |
aacctaatgaatgaatggtcttgtccatgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcat |
182 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| |||||||||||||| |||| |||||||||||| ||| ||||| |||| ||||| |
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| T |
21921926 |
aacctaatgaatgaatggtcctctccatgtcatggatgtaattgttttccatagttttccttgcacataaaccgcttccaaggttcat |
21921839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 39196683 - 39196517
Alignment:
| Q |
18 |
aactatcccaaaacatatttagatatgcag---tggagaaaggagagacaaaggttccaacatccaagacatctatttgaaacctaatgaatgaatggtc |
114 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |||||| |||| || ||| ||||||||||| ||| |||||| || |||||||||||||||||||| |
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| T |
39196683 |
aactatcccaaaacagattttgatatgcagcattggagagaggaaagccaagtgttccaacatc-aagtcatctacttctaacctaatgaatgaatggtc |
39196585 |
T |
|
| Q |
115 |
ttgtccatgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcat |
182 |
Q |
| |
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| |||| |||||| |||||||||||||| |||| |||||||||||||||| ||||| |||| ||||| |
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| T |
39196584 |
ctctccacgtcatggatgtaattgttttccatagttttccttgcacaaaaaccgcttccaaggttcat |
39196517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 183 - 331
Target Start/End: Complemental strand, 39196493 - 39196347
Alignment:
| Q |
183 |
atattctctcccaaacaacatccataaacctgcaagtgaacgaacatggaaggttttgttgtgaaaacaaaaagagcatatgggttgagtg----aaagt |
278 |
Q |
| |
|
|||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||| ||||| |
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| T |
39196493 |
atattctctcccaaacaaaatcgatgaacctgcaagtgaac----atggaaggttttgttgtgaaaacgaaaagagcaaa--ggttgagtgggacaaagt |
39196400 |
T |
|
| Q |
279 |
ataggtgctactcttttgttatcaataaatatgaacccttaacttcttttaaa |
331 |
Q |
| |
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||||||| ||||||||| |||||||||||| ||||||||| | || ||||||| |
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|
| T |
39196399 |
ataggtgttactcttttattatcaataaatctgaacccttcatttgttttaaa |
39196347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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