View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16271_low_5 (Length: 458)
Name: NF16271_low_5
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16271_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 16837619 - 16837189
Alignment:
| Q |
18 |
ttacattggctacaatatgatggaagttgaagcacatgacgaagggaatgataaagatggtaatggaaataggaaaccgcgagtcggcatgatctttgaa |
117 |
Q |
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| T |
16837619 |
ttacattggctacaatatgatggaagttgaagcacatgacgaagggaatgataaagatggtaatggaaataggaaaccacgagtcggcatgatctttgaa |
16837520 |
T |
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| Q |
118 |
tctcaagaatctgcagtgtcattttatagtgcatatgcaagacatgtaggatttagcatcggcttttgtcaattcaaccgtgtcggttcaattgaatttt |
217 |
Q |
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| T |
16837519 |
tctaaagaatctgcagtgtcattttatagtgcatatgcaagacatgtaggatttagcatcggcttttgtcaattcaaccatgtcggttcaattgaatttt |
16837420 |
T |
|
| Q |
218 |
gggacattacttgttctaatgaagtattaaaaaggaagaatgtggcaagttgcgatgcaatgcttaggatagagagaaaagataaatattggacagtgac |
317 |
Q |
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| T |
16837419 |
gggacattacttgttctaatgaagtattcaaaaggaagaatgtggcaagttgcgatgcaatgcttaggatagagagaaaagataaatattggacagtgac |
16837320 |
T |
|
| Q |
318 |
aaagtttgttgaggaccacagccattctctagcttcctctaaaacggagaaacacagtcggccgcgtaggcattttgtaggttctaaaaggaacgttgga |
417 |
Q |
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| T |
16837319 |
aaagtttgttgaggaccacagccattctctagcttcctctaaaacggagaaacacagtcggccgcgtaggcattttgtaggttctaaaaggaacgttgga |
16837220 |
T |
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| Q |
418 |
gagacatccaatgccagtaatgattcctatg |
448 |
Q |
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| T |
16837219 |
gagacatccaatgccagtaatgattcctatg |
16837189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 32216583 - 32216446
Alignment:
| Q |
63 |
gaatgataaagatggtaatggaaataggaaaccgcgagtcggcatgatctttgaatctcaagaatctgcagtgtcattttatagtgcatatgcaagacat |
162 |
Q |
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|||||||||||||||||||| |||||||||| | |||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||| |
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| T |
32216583 |
gaatgataaagatggtaatgtaaataggaaagcacgagtcggcatgatgtttgaatctgaagaatctgcaaagtcattttatggtgcatatgcaagacat |
32216484 |
T |
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| Q |
163 |
gtaggatttagcatcggcttttgtcaattcaaccgtgt |
200 |
Q |
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| T |
32216483 |
gttggatttagcatcgacgtttgtcaattcaaccgtgt |
32216446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 32216255 - 32216392
Alignment:
| Q |
63 |
gaatgataaagatggtaatggaaataggaaaccgcgagtcggcatgatctttgaatctcaagaatctgcagtgtcattttatagtgcatatgcaagacat |
162 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||| |
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| T |
32216255 |
gaatgataaagatggtaatggaaataggaaaccacgagttggcatgatgtttgaatctgaagaatctgcaaagtcattttatggtgcatatgcaagacat |
32216354 |
T |
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| Q |
163 |
gtaggatttagcatcggcttttgtcaattcaaccgtgt |
200 |
Q |
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|||||||||||||| | |||||||||||||| |||| |
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| T |
32216355 |
gtaggatttagcatgtacgtttgtcaattcaactgtgt |
32216392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 32216718 - 32216674
Alignment:
| Q |
21 |
cattggctacaatatgatggaagttgaagcacatgacgaagggaa |
65 |
Q |
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||||||||||| |||| |||||||||||||||| || |||||||| |
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| T |
32216718 |
cattggctacactatggtggaagttgaagcacaggatgaagggaa |
32216674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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