View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16271_low_6 (Length: 408)
Name: NF16271_low_6
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16271_low_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 226 - 408
Target Start/End: Original strand, 1160824 - 1161010
Alignment:
| Q |
226 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagacctataattattggaacaaa |
325 |
Q |
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| T |
1160824 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagatctataattattggaacaaa |
1160923 |
T |
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| Q |
326 |
cttaattacgatataaacatgtatagatcaaaccatta----atatatatgttgaaatattaggaatgcaattcaatggataaacat |
408 |
Q |
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| T |
1160924 |
cttaattaccatataaacatgtatagatcaaatcattaatatatatatatgttgaaatattaagaatgcaattcaatggataaacat |
1161010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 1160583 - 1160712
Alignment:
| Q |
18 |
ttgagcaaatgaattgataagtaggaacaagactagaaacattgaaatcttcatattcatttgatatggcttcatttgaactgtagtcattggttggtag |
117 |
Q |
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| T |
1160583 |
ttgagcacatgaattgataagtaggaacaagactagaaacattgaaatcttcatattcatttgatatggcttcatttgaactgtagtca----ttggtag |
1160678 |
T |
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| Q |
118 |
ggtaaaggggttatataaagactttaattgaagg |
151 |
Q |
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| T |
1160679 |
ggtaaaggggttatataaagactttaattgaagg |
1160712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 1160714 - 1160755
Alignment:
| Q |
177 |
tgaaagtaatttaatgtggtcccaaaaaatggtaatagaaag |
218 |
Q |
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| T |
1160714 |
tgaaagtaattcaatgtggtcccaaaaaatggtaatagaaag |
1160755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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