View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16271_low_8 (Length: 346)
Name: NF16271_low_8
Description: NF16271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16271_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 3778879 - 3778562
Alignment:
| Q |
19 |
catgtcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778879 |
catgtcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctc |
3778780 |
T |
|
| Q |
119 |
caataaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgtagctcgttgaggttactgtg |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778779 |
caataaacaaacaagacttgccacacgatgttgtcttggaaattgaactcgcggtggttcaatccatgccatctcttcgtagctcgttgaggttactgtg |
3778680 |
T |
|
| Q |
219 |
ttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778679 |
ttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgta |
3778580 |
T |
|
| Q |
319 |
tacttcccactttctgcc |
336 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3778579 |
tacttcccactttctgcc |
3778562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 3706977 - 3707294
Alignment:
| Q |
19 |
catgtcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
3706977 |
catgtcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataagctgcagtttcctccctc |
3707076 |
T |
|
| Q |
119 |
caataaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgtagctcgttgaggttactgtg |
218 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||| | |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
3707077 |
caataaacaaactagacttcccacacgatgttggcatggaaattgaactcgcggtggttcaatccatgccatctcttcgcaactcgttgaggttactgtg |
3707176 |
T |
|
| Q |
219 |
ttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgta |
318 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||| |
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| T |
3707177 |
ttcaacttcaacatgcacaccagtgtcagcattggttgttgatccttttgcaagtcaagcattagaaatagctaaagacttgaacctcttatcttttgta |
3707276 |
T |
|
| Q |
319 |
tacttcccactttctgcc |
336 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
3707277 |
tatttcccactttctgcc |
3707294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 3718486 - 3718803
Alignment:
| Q |
19 |
catgtcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
3718486 |
catgtcacttgcatcttccccaccattgatgcaccaatccctgccaccctcaaattacttgagtctcttccgtcatccataaaatgcactttcctccctc |
3718585 |
T |
|
| Q |
119 |
caataaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgtagctcgttgaggttactgtg |
218 |
Q |
| |
|
||||||||||||||||||| ||||| || || | ||||| || | || | |||||||||||||| |||||| | || |||||||||||| || |
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| T |
3718586 |
caataaacaaacaagacttaccacaggattttattggggaaaacgatttggcgaccgctcaatccatgccatgtcttcggaacttgttgaggttactttg |
3718685 |
T |
|
| Q |
219 |
ttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgta |
318 |
Q |
| |
|
||||| ||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| || |
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| T |
3718686 |
ttcaatttcaacatgcacaccagtgtcagcattggttgttgatccttttgcaagtcaagcattagaaatagctaaagacttgaacctcttatcttttata |
3718785 |
T |
|
| Q |
319 |
tacttcccactttctgcc |
336 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3718786 |
tacttcccactttctgcc |
3718803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 23 - 336
Target Start/End: Complemental strand, 3771214 - 3770901
Alignment:
| Q |
23 |
tcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctccaat |
122 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3771214 |
tcacttgcatcttctccactattgatgcaccaatccctgccaccctcaaattacttgaatctcttccttcatccataaactgcactttcctccctccaat |
3771115 |
T |
|
| Q |
123 |
aaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgtagctcgttgaggttactgtgttca |
222 |
Q |
| |
|
|||||||||||||| |||| | || ||||||||||||| ||| | | || |||||||||||||||| |||| | || ||| || |||||||| |
|
|
| T |
3771114 |
taacaaacaagacttaccacgcgattttgtcttggaaatcgaattgacgacggctcaatccatgccatcttttcgcaagtcattgttgtccttgtgttca |
3771015 |
T |
|
| Q |
223 |
acttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatact |
322 |
Q |
| |
|
| |||||||| | |||| || ||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||| |
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| T |
3771014 |
agttcaacatcctcaccagtggtagcattggttgttgatccttatgcaagtcaagcattagaaatagcaaaagactagaacatcttatcttttgtatact |
3770915 |
T |
|
| Q |
323 |
tcccactttctgcc |
336 |
Q |
| |
|
| |||||||||||| |
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|
| T |
3770914 |
ttccactttctgcc |
3770901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 336
Target Start/End: Complemental strand, 33006102 - 33005792
Alignment:
| Q |
23 |
tcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctccaat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
33006102 |
tcacttgcatcttccccaccattgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaat |
33006003 |
T |
|
| Q |
123 |
aaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgtagctcgttgaggttactgtgttca |
222 |
Q |
| |
|
||| ||||||||| | ||||| | ||| | || || ||||||| | || | |||||||||||||| |||| |||||||| || || |||||| |
|
|
| T |
33006002 |
aaaaaaacaagacctaccacaagaagttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttca |
33005903 |
T |
|
| Q |
223 |
acttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatact |
322 |
Q |
| |
|
|||||||| ||||||||| ||| | ||||||||||||||||||| || |||||||||||||| ||||| || ||| ||||||||||| | |||| |
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|
| T |
33005902 |
acttcaac---cacaccggttgtagcaatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtact |
33005806 |
T |
|
| Q |
323 |
tcccactttctgcc |
336 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
33005805 |
tccctgtttctgcc |
33005792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 3700300 - 3700412
Alignment:
| Q |
23 |
tcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctccaat |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |
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|
| T |
3700300 |
tcacttgcatcttccccactattgatgcacctatccctgccaccctcaaattacttgaatctcttccttcatcaataaactgcactttcctccctccagt |
3700399 |
T |
|
| Q |
123 |
aaacaaacaagac |
135 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
3700400 |
taacatacaagac |
3700412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 3700557 - 3700616
Alignment:
| Q |
277 |
gcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgcc |
336 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
3700557 |
gcattagaaatagcaaaagagttcaacctcttatctttcatatactttccactttctgcc |
3700616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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