View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16272_high_1 (Length: 876)
Name: NF16272_high_1
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_high_1 |
 | |
|
| [»] scaffold0758 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 783; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 783; E-Value: 0
Query Start/End: Original strand, 19 - 870
Target Start/End: Complemental strand, 17993519 - 17992670
Alignment:
| Q |
19 |
tatatcaatcttgttttgccacacacagataatatatatattcctcnnnnnnnattgaatcaattaacataatataatcaagcattaattatgttgaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17993519 |
tatatcaatcttgttttgccacacacagataatatatatattcctctttttttattgaatcaattaacataatataatcaagcattaattatgttgaata |
17993420 |
T |
|
| Q |
119 |
agagagaaaagagagacatatatgatgaaaactgtgtggatgatgttacaagaagttcaggtggcgcatgtgggcgcgtcagaggtggtctacggcggat |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17993419 |
agagagaaaagagagacatat--gatgaaaactgtgtggatgatgttacaagaagttcaggtggcgcatgtgggtgcgtcagaggtggtctacggcggat |
17993322 |
T |
|
| Q |
219 |
cattggaggacaggccggtctggacgaggtgcagcggatggtggtggtcagtcactgaaaatgtcgtcggaaaaggaggcaacggcgttgatagtggctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17993321 |
cattggaggacaggccggtctggacgaggtgcagcggatggtggtggtcagtcactgaaaatgtcgtcggaaaaggaggcaacggcgttgatagtggctg |
17993222 |
T |
|
| Q |
319 |
attgaaccgtaaagtgaagaatctagacgccggaaagtgtcacggcagtggaggaggggcaaaccggatttgaaacaaggtttttcaataaaaacaaaat |
418 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17993221 |
attgaaccgtaaagtgaagaatctagatgccggaaagtgtcacggcagtggaggaggggcaaaccggatttgaaacaaggttttccaataaaaacaaaat |
17993122 |
T |
|
| Q |
419 |
caactgaataaagtgggtcaacacacccctcacaacgagcacatgtattctgttgagannnnnnnctttggaaaaccgtgtttcaaagccagttcaaaga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17993121 |
caactgaataaagtgggtcaacacacccctcacaacgagcacatgtattctgttgagatttttttctttggaaaaccgtgtttcaaagccagttcaaaga |
17993022 |
T |
|
| Q |
519 |
aattatacataataaatagaagccaaatatatattatcttccttaagttaaatgtgttatagagaaaagatatatgtttaggtcattgcatgttgaaaca |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17993021 |
aattatacataataaatagaagccaaatatatattatcttccttaagttaaatgtgttatagagaaaagatatatgtttaggtcattgcatgttgaaaca |
17992922 |
T |
|
| Q |
619 |
atttgattttcattatattaatttgttattacatatcaagacgtatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatg |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17992921 |
atttgattttcattatattaatttgttattacatatcaagacgtatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatg |
17992822 |
T |
|
| Q |
719 |
aatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaaatc |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17992821 |
aatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaaatc |
17992722 |
T |
|
| Q |
819 |
tcgaatatcagaagtgaattcacttctagacttggaatataatgatgatgtc |
870 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17992721 |
tcgaatatcagaagtgaattcacttctagacttggaatataatgatggtgtc |
17992670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 7485621 - 7485651
Alignment:
| Q |
109 |
atgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7485621 |
atgttgaataagagagaaaagagagacatat |
7485651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 6103757 - 6103724
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatatatga |
143 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
6103757 |
tgttgtataagagagaaaagagagacatatatga |
6103724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 26006195 - 26006252
Alignment:
| Q |
329 |
aaagtgaagaatctagacgccggaaagtgtcacggcagtggaggaggggcaaaccgga |
386 |
Q |
| |
|
||||||| ||| ||||| ||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
26006195 |
aaagtgatgaaactagatgccaaaaagtgtcccggcaggggaggaggggcaaaccgga |
26006252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 1e-71; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 645 - 862
Target Start/End: Original strand, 25074372 - 25074589
Alignment:
| Q |
645 |
tattacatatcaagacgtatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaa |
744 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25074372 |
tattatatatcaagacatatatgtgattattattctaatgcatgtatttaaatatttatgattggacagaaatgaatatgaacgtgattttattgaaaaa |
25074471 |
T |
|
| Q |
745 |
atagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaaatctcgaatatcagaagtgaattcacttc |
844 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||| ||||||||| | ||||||||| ||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
25074472 |
atagttagagacgtctccaacaagattaaccaaattcctttacatgttactgattaccttgttggtcttcgatctcgaatttcagaagtgaattcacttc |
25074571 |
T |
|
| Q |
845 |
tagacttggaatataatg |
862 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
25074572 |
tagacttgggatataatg |
25074589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 645 - 853
Target Start/End: Original strand, 26636148 - 26636356
Alignment:
| Q |
645 |
tattacatatcaagacgtatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaa |
744 |
Q |
| |
|
||||| ||||||| || |||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26636148 |
tattatatatcaatacatatacgtgattgttattctgatacatgtatttaaatattcatgattggacagaaatgaatatgaacgtgattttattgaaaaa |
26636247 |
T |
|
| Q |
745 |
atagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaaatctcgaatatcagaagtgaattcacttc |
844 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||| |||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
26636248 |
atagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaaatctcgaatatcagaagtgaactcacttc |
26636347 |
T |
|
| Q |
845 |
tagacttgg |
853 |
Q |
| |
|
||||||||| |
|
|
| T |
26636348 |
tagacttgg |
26636356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 645 - 853
Target Start/End: Original strand, 26742114 - 26742322
Alignment:
| Q |
645 |
tattacatatcaagacgtatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaa |
744 |
Q |
| |
|
||||| ||||||| || |||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26742114 |
tattatatatcaatacatatacgtgattgttattctgatacatgtatttaaatattcatgattggacagaaatgaatatgaacgtgattttattgaaaaa |
26742213 |
T |
|
| Q |
745 |
atagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaaatctcgaatatcagaagtgaattcacttc |
844 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||| |||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
26742214 |
atagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaaatctcgaatatcagaagtgaactcacttc |
26742313 |
T |
|
| Q |
845 |
tagacttgg |
853 |
Q |
| |
|
||||||||| |
|
|
| T |
26742314 |
tagacttgg |
26742322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 651 - 843
Target Start/End: Original strand, 26959634 - 26959826
Alignment:
| Q |
651 |
atatcaagacgtatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaaatagtt |
750 |
Q |
| |
|
||||||| || ||||||||||| ||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26959634 |
atatcaatacatatatgtgattgttattctaatacatgtatttaaatatttatgattggacagaaatgagtatgaacgtgattttattgaaaaaatagtt |
26959733 |
T |
|
| Q |
751 |
acagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaaatctcgaatatcagaagtgaattcactt |
843 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26959734 |
acagacgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaaatctcgaatatcaaaagtgaattcactt |
26959826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 645 - 853
Target Start/End: Original strand, 26975453 - 26975661
Alignment:
| Q |
645 |
tattacatatcaagacgtatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaa |
744 |
Q |
| |
|
||||| |||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26975453 |
tattatatatcagtacatatatgtgattgttattctgatgcatgtatttaaatatttatgattggacagaaatgaatatgaacgtgattttattgaaaaa |
26975552 |
T |
|
| Q |
745 |
atagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaaatctcgaatatcagaagtgaattcacttc |
844 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||| | ||||||| ||||| | |
|
|
| T |
26975553 |
atagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaaatctcgaatattaaaagtgaactcactac |
26975652 |
T |
|
| Q |
845 |
tagacttgg |
853 |
Q |
| |
|
||||||||| |
|
|
| T |
26975653 |
tagacttgg |
26975661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 674 - 843
Target Start/End: Original strand, 26950274 - 26950443
Alignment:
| Q |
674 |
ttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaa |
773 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| || |
|
|
| T |
26950274 |
ttattctgatgcatttatttaaatatttatgattggacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaa |
26950373 |
T |
|
| Q |
774 |
ccacgttccattacatgttgccgattaccttattggtctcaaatctcgaatatcagaagtgaattcactt |
843 |
Q |
| |
|
||||||||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26950374 |
ccacgttcctctacatgttgctgattaccttgttggactcaaatctcgaatatcagaagtgaattcactt |
26950443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 674 - 824
Target Start/End: Original strand, 31288836 - 31288986
Alignment:
| Q |
674 |
ttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaa |
773 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31288836 |
ttattctgatgcatttatttaaatatttatgattggacataaatgaatatgaacgagattttattgaaaaaatagttacagatgtctccaacaagattaa |
31288935 |
T |
|
| Q |
774 |
ccacgttccattacatgttgccgattaccttattggtctcaaatctcgaat |
824 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
31288936 |
ccatgttcctttacatgttgctgattaccttgttggtctcaaatctcgaat |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 689 - 865
Target Start/End: Original strand, 26849258 - 26849434
Alignment:
| Q |
689 |
tatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattaca |
788 |
Q |
| |
|
|||| |||||||| ||| || |||||||||||||||||| ||||||||| |||||||||| || ||||||||||| ||||| ||||| || || |
|
|
| T |
26849258 |
tattcaaatatttctgaatgaacagaaatgaatatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgca |
26849357 |
T |
|
| Q |
789 |
tgttgccgattaccttattggtctcaaatctcgaatatcagaagtgaattcacttctagacttggaatataatgatg |
865 |
Q |
| |
|
|||||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
26849358 |
tgttgctgattaccttgttggacttaaatctcgaatatcagaagtgaattcacttctagaattggaatctaatgatg |
26849434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 666 - 853
Target Start/End: Complemental strand, 27664864 - 27664677
Alignment:
| Q |
666 |
tgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacacttccaac |
765 |
Q |
| |
|
||||||| ||||||| || ||| ||||||||||| | ||||||||||||||| |||||||| | ||||||||| |||||||||||||| |||||| |
|
|
| T |
27664864 |
tgtgattgttattctaatacatctatttaaatatgtatgattggacagaaataaatatgaatacaaatttattgaagaaatagttacagacgtctccaac |
27664765 |
T |
|
| Q |
766 |
aagattaaccacgttccattacatgttgccgattaccttattggtctcaaatctcgaatatcagaagtgaattcacttctagacttgg |
853 |
Q |
| |
|
||||| |||| || ||||||||||| || |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27664764 |
aagatcaaccgttgtcatttacatgttgctgagtaccttgttggactcgaatctcgaatatcagaagtgaattcacttctagacttgg |
27664677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 662 - 751
Target Start/End: Original strand, 24716104 - 24716193
Alignment:
| Q |
662 |
tatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttattgaaaaaatagtta |
751 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| || |||| |||||||||||||||||| ||||| | ||| |||||||||||||||||| |
|
|
| T |
24716104 |
tatatgtgattgttattctgatgcacgtattataacatttatgattggacagaaatgaacatgaaggcgatgttattgaaaaaatagtta |
24716193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 645 - 737
Target Start/End: Original strand, 25074191 - 25074283
Alignment:
| Q |
645 |
tattacatatcaagacgtatatgtgatttttattctgatgcatgtatttaaatatttttgattggacagaaatgaatatgaacgtgattttat |
737 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||| |||| | || |||||||| | |||||||||| |||||||||||||||||||||||| |
|
|
| T |
25074191 |
tattacatatcaatacatatatgtgattgctattctaatgcgtatagttaaatatctatgattggacataaatgaatatgaacgtgattttat |
25074283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 4885270 - 4885241
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4885270 |
tgttgaataagagagaaaagagagacatat |
4885241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 727
Target Start/End: Original strand, 25074023 - 25074088
Alignment:
| Q |
663 |
atatgtgatttttattctgatgcatgtatttaaa-tatttttgattggacagaaatgaatatgaac |
727 |
Q |
| |
|
|||| ||||| |||| || |||||||||| |||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
25074023 |
atatatgattgttatcctaatgcatgtatataaaatatttatgattggacagaaatggatatgaac |
25074088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 19125568 - 19125502
Alignment:
| Q |
329 |
aaagtgaagaatctagacgccggaaagtgtcacggcagtggaggaggggcaaaccggatttgaaaca |
395 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||| || |||||||| |
|
|
| T |
19125568 |
aaagtgaagaatctagatgccgaaaagtgtcatggcaatggaggaggggcaaaccagagttgaaaca |
19125502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 6727480 - 6727524
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatatatgatgaaaactgtgtg |
156 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
6727480 |
tgttgaataagagagaaaagagagac--atatgatgaaaaccgtgtg |
6727524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 40915717 - 40915688
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40915717 |
tgttgaataagagagaaaagagagacatat |
40915688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 55252505 - 55252475
Alignment:
| Q |
109 |
atgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
55252505 |
atgttgaataagagagaaaagagagacatat |
55252475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 6028837 - 6028866
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6028837 |
tgttgaataagagagaaaagagagacatat |
6028866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 55256543 - 55256514
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
55256543 |
tgttgaataagagagaaaagagagacatat |
55256514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 16457152 - 16457122
Alignment:
| Q |
109 |
atgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16457152 |
atgttgaataagagagaaaagagagacatat |
16457122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 41488291 - 41488321
Alignment:
| Q |
109 |
atgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41488291 |
atgttgaataagagagaaaagagagacatat |
41488321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 41492555 - 41492585
Alignment:
| Q |
109 |
atgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41492555 |
atgttgaataagagagaaaagagagacatat |
41492585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0758 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0758
Description:
Target: scaffold0758; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 810 - 781
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
810 |
tgttgaataagagagaaaagagagacatat |
781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 21505214 - 21505260
Alignment:
| Q |
109 |
atgttgaataa-gagagaaaagagagacatatatgatgaaaactgtgtg |
156 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21505214 |
atgttgaataaagagagaaaagagagac--atatgatgaaaactgtgtg |
21505260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 22826328 - 22826357
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22826328 |
tgttgaataagagagaaaagagagacatat |
22826357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 1566050 - 1566079
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1566050 |
tgttgaataagagagaaaagagagacatat |
1566079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 10895422 - 10895393
Alignment:
| Q |
110 |
tgttgaataagagagaaaagagagacatat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10895422 |
tgttgaataagagagaaaagagagacatat |
10895393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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