View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16272_high_4 (Length: 563)
Name: NF16272_high_4
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16272_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 4174213 - 4174756
Alignment:
| Q |
1 |
tgggttctccgactgcgaaatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtct |
100 |
Q |
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| T |
4174213 |
tgggttgtccgactgcgaaatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtct |
4174312 |
T |
|
| Q |
101 |
tcgatagaagtgtcgtcatcagagttgatggttgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttg |
200 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174313 |
tcgatagaagtgtcgtcatcagagttaatggctgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttg |
4174412 |
T |
|
| Q |
201 |
gagtcattgggtgccaagcgtctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaa |
300 |
Q |
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| T |
4174413 |
gagtcattgggtgccaagcgtctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaa |
4174512 |
T |
|
| Q |
301 |
gactatagtctcatccggcgtagaatccattatgtttagtagctctggaggccagttttctactagatccttagcttgcttctttagcaccgatggctcg |
400 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4174513 |
gactatagtgtcatccggcgtagaatccattatgtttagtagctctggaagccagttttctacaagatccttagcttgcttctttagcaccgatggctcg |
4174612 |
T |
|
| Q |
401 |
gttgttttaggacctaccattgaactcaactatttttcatttgaacaataaactaagtaatttaactgtatatgcatgtagttagaagtaagaacctgga |
500 |
Q |
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| T |
4174613 |
gttgttttaggacctaccattgaactcaactatttttcatttgaacaataaactaagtaatttaactgtatatgcatgtagttagaagtaagaacctgga |
4174712 |
T |
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| Q |
501 |
gatgaactattgaaggtgacaaaccaatacactttggtaggaga |
544 |
Q |
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| T |
4174713 |
gatgaactattgaaggtgacaaaccaatacactttggtaggaga |
4174756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 544
Target Start/End: Original strand, 4170239 - 4170761
Alignment:
| Q |
22 |
cgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtcatca |
121 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
4170239 |
cgaacccacaagatttgcccgtatggttagtggaaatatgcgcggccatctttcattgccatatgatctaaaagcgtcttcgatagaagagtc---atca |
4170335 |
T |
|
| Q |
122 |
gagttgatggttgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttggagtcattgggtgccaagcgt |
221 |
Q |
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| T |
4170336 |
gaatcaattgctgcagcaagctttttagcaagaaccactgcatcctcaagagcacaacaagctccttgcccaagatttggagtcattgggtgccaagcat |
4170435 |
T |
|
| Q |
222 |
ctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaagactatagtctcatccggcgt |
321 |
Q |
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| ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||| || |||||| |||||||| || |
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| T |
4170436 |
caccaacgagtacaactctacctgcagaaacaggtggacttgttgatggccaaagccatcgatccaccaacggagtcctgattatagtgtcatccggtgt |
4170535 |
T |
|
| Q |
322 |
agaatccattatgtttagtagctctggaggccagttttctactagatccttagcttgcttctttagcaccgatggctcggttgttttaggacctaccatt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
4170536 |
agaatccattatgtttagtagctctggaggccagttttccactagatccttagcttgcttctttagcaccgatggctcagttgttttaggacctgccatt |
4170635 |
T |
|
| Q |
422 |
gaactcaactatttttcatttgaacaataaactaagtaatttaactgtatatgca---tgtagttagaagtaagaacctggagatgaactattgaaggtg |
518 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| || ||| | |||| | |||||| |||||||||||||||| |||||| | |
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| T |
4170636 |
gaactcaactatttttcatttgaacaataaactcagtaatttaatcatacatggacttattagtaacaagtaacaacctggagatgaactgttgaagcag |
4170735 |
T |
|
| Q |
519 |
acaaaccaatacactttggtaggaga |
544 |
Q |
| |
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| ||||||||| |||||||| ||||| |
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| T |
4170736 |
ataaaccaatagactttggttggaga |
4170761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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