View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16272_low_10 (Length: 352)

Name: NF16272_low_10
Description: NF16272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16272_low_10
NF16272_low_10
[»] scaffold1526 (1 HSPs)
scaffold1526 (21-340)||(919-1217)
[»] chr8 (1 HSPs)
chr8 (24-340)||(44495589-44495884)
[»] scaffold0642 (1 HSPs)
scaffold0642 (21-340)||(4184-4482)
[»] scaffold0345 (1 HSPs)
scaffold0345 (21-340)||(14096-14394)
[»] scaffold0105 (1 HSPs)
scaffold0105 (21-340)||(24587-24885)
[»] chr4 (2 HSPs)
chr4 (21-200)||(15707440-15707615)
chr4 (38-83)||(28336295-28336340)
[»] chr2 (3 HSPs)
chr2 (21-340)||(3378316-3378612)
chr2 (72-151)||(30355844-30355920)
chr2 (238-323)||(30356023-30356111)
[»] scaffold0016 (2 HSPs)
scaffold0016 (19-159)||(53719-53859)
scaffold0016 (237-340)||(53629-53725)
[»] chr5 (4 HSPs)
chr5 (250-324)||(36932835-36932912)
chr5 (94-156)||(17850513-17850575)
chr5 (148-218)||(36932947-36933017)
chr5 (65-99)||(36933044-36933078)


Alignment Details
Target: scaffold1526 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 340
Target Start/End: Complemental strand, 1217 - 919
Alignment:
Q  21 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  1217 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaa----tcatgaccgaacacggc 1122  T
Q  121 aaactcaaatcctactccggccaccctcctccgccgtcgtttcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttgccacctc 220  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1121 aaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctc 1022  T
Q  221 ttcac-----cccttatccctgccgtcagtttctctcaccccgaccctcctcctggatccgacccctccgcccctcctccctattacagttatggctact 315  Q
    |||||     |||||| |||| ||||| |||||               |||||||||||||||||||||||       ||||||||||||||||||||||    
T  1021 ttcaccctaacccttaccccttccgtcggtttc---------------cctcctggatccgacccctccgc-------ccctattacagttatggctact 944  T

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Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 340
Target Start/End: Original strand, 44495589 - 44495884
Alignment:
Q  24 catccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggcaaa 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  44495589 catccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaa----caaacaatcatgaccgaacacggcaaa 44495684  T
Q  124 ctcaaatcctactccggccaccctcctccgccgtcgtttcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttgccacctcttc 223  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44495685 ctcaaatcctattccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctcttc 44495784  T
Q  224 ac-----cccttatccctgccgtcagtttctctcaccccgaccctcctcctggatccgacccctccgcccctcctccctattacagttatggctactaag 318  Q
    ||     |||||| |||||||||| |||||               |||||||||||||||||||||||       |||||||||||||||||||||||||    
T  44495785 accctaacccttacccctgccgtcggtttc---------------cctcctggatccgacccctccgc-------ccctattacagttatggctactaag 44495862  T

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Target: scaffold0642 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 4184 - 4482
Alignment:
Q  21 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  4184 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaa----caaacaatcatgaccgaacacggc 4279  T
Q  121 aaactcaaatcctactccggccaccctcctccgccgtcgtttcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttgccacctc 220  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4280 aaactcaaatcctactccggccaccctcctccgccgtcgttgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctc 4379  T
Q  221 ttcac-----cccttatccctgccgtcagtttctctcaccccgaccctcctcctggatccgacccctccgcccctcctccctattacagttatggctact 315  Q
    |||||     |||||| |||||||||| |||||               |||||||||||||||||||||||       |||||||||||||||  |||||    
T  4380 ttcaccctaacccttacccctgccgtcggtttc---------------cctcctggatccgacccctccgc-------ccctattacagttattactact 4457  T

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Target: scaffold0345 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 14096 - 14394
Alignment:
Q  21 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  14096 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaa----caaacaatcatgaccgaacacggc 14191  T
Q  121 aaactcaaatcctactccggccaccctcctccgccgtcgtttcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttgccacctc 220  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14192 aaactcaaatcctactccggccaccctcctccgccgtcgttgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctc 14291  T
Q  221 ttcac-----cccttatccctgccgtcagtttctctcaccccgaccctcctcctggatccgacccctccgcccctcctccctattacagttatggctact 315  Q
    |||||     |||||| |||||||||| |||||               |||||||||||||||||||||||       |||||||||||||||  |||||    
T  14292 ttcaccctaacccttacccctgccgtcggtttc---------------cctcctggatccgacccctccgc-------ccctattacagttattactact 14369  T

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Target: scaffold0105 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 21 - 340
Target Start/End: Complemental strand, 24885 - 24587
Alignment:
Q  21 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  24885 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaa----tcatgaccgaacacggc 24790  T
Q  121 aaactcaaatcctactccggccaccctcctccgccgtcgtttcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttgccacctc 220  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24789 aaactcaaatcctactccggccaccctcctccgccgtcgttgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctc 24690  T
Q  221 ttcac-----cccttatccctgccgtcagtttctctcaccccgaccctcctcctggatccgacccctccgcccctcctccctattacagttatggctact 315  Q
    |||||     |||||| |||||||||| |||||               |||||||||||||||||||||||       |||||||||||||||  |||||    
T  24689 ttcaccctaacccttacccctgccgtcggtttc---------------cctcctggatccgacccctccgc-------ccctattacagttattactact 24612  T

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Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 15707440 - 15707615
Alignment:
Q  21 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  15707440 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaa----caaacaatcatgaccgaacacggc 15707535  T
Q  121 aaactcaaatcctactccggccaccctcctccgccgtcgtttcaatcctttcaacctccttagtacgagtctttccatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  15707536 aaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctctttagtacgagtctttccatgg 15707615  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 28336340 - 28336295
Alignment:
Q  38 ctccagatcggtgagtggcttcgttcttccctcctaacccccaact 83  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  28336340 ctccagattggttagtggtttcgttcatccctcctaacccccaact 28336295  T

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Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 3378316 - 3378612
Alignment:
Q  21 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||   |    
T  3378316 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaa----tcatgaccgaacaatcc 3378411  T
Q  121 aaactcaaatcctactccggccaccctcctccgccgtcgtttcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttgccacctc 220  Q
        ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3378412 tt--tcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctc 3378509  T
Q  221 ttcac-----cccttatccctgccgtcagtttctctcaccccgaccctcctcctggatccgacccctccgcccctcctccctattacagttatggctact 315  Q
    |||||     |||||| |||  ||||| |||||               |||||||||||||||||||||||       ||||||||||||||||||||||    
T  3378510 ttcaccctaacccttaccccctccgtcggtttc---------------cctcctggatccgacccctccgc-------ccctattacagttatggctact 3378587  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 30355844 - 30355920
Alignment:
Q  72 taacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctc 151  Q
    |||||||||||| |||||||    ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  30355844 taacccccaactcccaccaac---acaaacaatcatgaccgaacacgacaaacccaaatcctcctccggccaccctcctc 30355920  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 30356023 - 30356111
Alignment:
Q  238 ccgtcagtttctctcaccccgaccctcctcctggatccgacccctccg---cccctcctccctattacagttatggctactaagctttt 323  Q
    ||||| ||||| |||||||||  || |||||||| |||||||||||||   | |||||||||||||||  | |||||||| ||||||||    
T  30356023 ccgtcggtttccctcaccccgttccccctcctggctccgacccctccgctcctcctcctccctattaccctcatggctaccaagctttt 30356111  T

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Target: scaffold0016 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 53859 - 53719
Alignment:
Q  19 atacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacg 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53859 atacccatccatgaattcactccagagcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacg 53760  T
Q  119 gcaaactcaaatcctactccggccaccctcctccgccgtcg 159  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53759 gcaaactcaaatcctactccggccaccctcctccgccgtcg 53719  T

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Target: scaffold0016; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 237 - 340
Target Start/End: Complemental strand, 53725 - 53629
Alignment:
Q  237 gccgtcagtttctctcaccccgaccctcctcctggatccgacccctccgcccctcctccctattacagttatggctactaagctttttccgttattgttc 336  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||    
T  53725 gccgtcggtttccctcaccccgaccctcctcctggatccgacccctccgc-------ccctattacagttatggctactaagctttttccggtattgttc 53633  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 36932912 - 36932835
Alignment:
Q  250 ctcaccccgaccctcctcctggatccgacccctccgcc---cctcctccctattacagttatggctactaagcttttt 324  Q
    |||||||||||| ||||||| |||||||||||||||||   ||| |||| ||||||| | ||||||||||||||||||    
T  36932912 ctcaccccgaccgtcctcctcgatccgacccctccgcccttccttctccttattacactcatggctactaagcttttt 36932835  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 17850575 - 17850513
Alignment:
Q  94 aaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccg 156  Q
    |||||||| |||||| ||||||||  |||||||||||||| |||||| ||||| ||| |||||    
T  17850575 aaacaaaccatcatgcccgaacacaacaaactcaaatcctcctccggacacccaccttcgccg 17850513  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 36933017 - 36932947
Alignment:
Q  148 cctccgccgtcgtttcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttgccacc 218  Q
    |||||||||||||| |||||| ||  |||||||  |||||| |||||||||||||||| |||| | |||||    
T  36933017 cctccgccgtcgttccaatccctttcacctcctctgtacgactctttccatggcattttcaatctcccacc 36932947  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 36933078 - 36933044
Alignment:
Q  65 tccctcctaacccccaacttccaccaaacaaacaa 99  Q
    ||||||||||||||||||||||||| |||||||||    
T  36933078 tccctcctaacccccaacttccaccgaacaaacaa 36933044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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